RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 HIPK1Q86Z02 1210 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 EPHX4Q8IUS5 362 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 SPATA3Q8NHX4 192 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 C10orf105Q8TEF2 133 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 HTRA1Q92743 480 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC38A4Q969I6 547 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 TNFRSF13CQ96RJ3 184 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 SPATA5L1Q9BVQ7 753 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 MOKQ9UQ07 419 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 ARFGEF3Q5TH69 2177 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 STAB1Q9NY15 2570 aa10.08□□□□□ -0.8
SQSTM1-203ENST00000422245 RTTNQ86VV8 2226 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 RPL36A-HNRNPH2H7BZ11 118 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 NR5A2O00482 541 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 AIM2O14862 343 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC43A1O75387 559 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 UPK3AO75631 287 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 ARAFP10398 606 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 HOXB1P14653 301 aaPredicted RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 RPS5P46782 204 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 CLDN17P56750 224 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 NCALDP61601 193 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 ROR2Q01974 943 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 EGR4Q05215 589 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 LGALS3BPQ08380 585 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 C1DQ13901 141 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 SWI5Q1ZZU3 235 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 BEND6Q5SZJ8 279 aaPredicted RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 PODNL1Q6PEZ8 512 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 BLOC1S3Q6QNY0 202 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 MSRB3Q8IXL7 192 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 FAM169BQ8N8A8 192 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 LSMEM1Q8N8F7 131 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 ADPRHL1Q8NDY3 354 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 LRRC8CQ8TDW0 803 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 DNAJA4Q8WW22 397 aaPredicted RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 PROX1Q92786 737 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 BCL2L2Q92843 193 aaPredicted RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC25A36Q96CQ1 311 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 SPDL1Q96EA4 605 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 FBXO17Q96EF6 278 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 KTI12Q96EK9 354 aaPredicted RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 OXGR1Q96P68 337 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 CCDC28BQ9BUN5 200 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 MYOZ1Q9NP98 299 aaPredicted RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 CA10Q9NS85 328 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC25A37Q9NYZ2 338 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 B3GAT1Q9P2W7 334 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 CRNNQ9UBG3 495 aaPredicted RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 TESQ9UGI8 421 aaKnown RBP10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 CDC42EP3Q9UKI2 254 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 CORO2BQ9UQ03 480 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 GMEB1Q9Y692 573 aa10.07□□□□□ -0.8
SQSTM1-203ENST00000422245 FBN3Q75N90 2809 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 TRAV36DV7A0A075B6V5 113 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 A0A1B0GWA3 101 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 PRORSD1PA6NEY8 169 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 M0R082 166 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 NDUFS8O00217 210 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 GPRIN2O60269 458 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 ZNF432O94892 652 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 F12P00748 615 aaPredicted RBP10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 IGLV1-44P01699 117 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 CECR9P0C854 216 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 USF1P22415 310 aaPredicted RBP10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 HTR2AP28223 471 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 SERPINF1P36955 418 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 PDLIM4P50479 330 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 CDK6Q00534 326 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 NAAAQ02083 359 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 MFSD13AQ14CX5 517 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 EFNB3Q15768 340 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 ALG10BQ5I7T1 473 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 AGBL2Q5U5Z8 902 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 FAM91A1Q658Y4 838 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 REEP3Q6NUK4 255 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 LINGO2Q7L985 606 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 SLC46A3Q7Z3Q1 461 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 NET1Q7Z628 596 aaPredicted RBP10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 GPR137CQ8N3F9 429 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 BHLHE22Q8NFJ8 381 aaPredicted RBP10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 OR4F15Q8NGB8 312 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 NFKBIDQ8NI38 313 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 ZNF417Q8TAU3 575 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 ZNF587Q96SQ5 575 aaPredicted RBP10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 EPYCQ99645 322 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 PIMREGQ9BSJ6 248 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 NELFAQ9H3P2 528 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 TMEM38AQ9H6F2 299 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 EVA1AQ9H8M9 152 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 TMEM160Q9NX00 188 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 SELENONQ9NZV5 590 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 KLHL14Q9P2G3 628 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 FBXO9Q9UK97 447 aaPredicted RBP10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 CORINQ9Y5Q5 1042 aa10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 ANK3Q12955 4377 aaKnown RBP10.06□□□□□ -0.8
SQSTM1-203ENST00000422245 YLPM1P49750 1951 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 IGKV1D-42A0A075B6H8 117 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 A0A096LPE4 126 aa10.05□□□□□ -0.8
SQSTM1-203ENST00000422245 TRBV5-3A0A0A0MS03 114 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms