RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 RBCK1Q9BYM8 510 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 B3GNT4Q9C0J1 378 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 OR51V1Q9H2C8 321 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 PDE7BQ9NP56 450 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 EXOSC3Q9NQT5 275 aaKnown RBP13.51□□□□□ -0.25
USP4-203ENST00000415188 ERVK-19Q9WJR5 959 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 ZNF337Q9Y3M9 751 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 LRRTM2O43300 516 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 HPGDSO60760 199 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 CCNKO75909 580 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 OR7A10O76100 309 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 KRT8P05787 483 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 NGFRP08138 427 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 OR2T7P0C7T2 308 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 PNMTP11086 282 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 NRG3P56975 720 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 ZNF85Q03923 595 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 HSF2Q03933 536 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 IL10RAQ13651 578 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 WDR74Q6RFH5 385 aaPredicted RBP13.5□□□□□ -0.25
USP4-203ENST00000415188 NCCRP1Q6ZVX7 275 aaPredicted RBP13.5□□□□□ -0.25
USP4-203ENST00000415188 CADM2Q8N3J6 435 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 SCAIQ8N9R8 606 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 C19orf18Q8NEA5 215 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 OR2T27Q8NH04 317 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 OR51Q1Q8NH59 317 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 MVB12AQ96EY5 273 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 ERMAPQ96PL5 475 aaPredicted RBP13.5□□□□□ -0.25
USP4-203ENST00000415188 DCLRE1CQ96SD1 692 aaKnown RBP13.5□□□□□ -0.25
USP4-203ENST00000415188 CTRCQ99895 268 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 TMEM43Q9BTV4 400 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 NDEL1Q9GZM8 345 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.5□□□□□ -0.25
USP4-203ENST00000415188 ZNF221Q9UK13 617 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 MRTO4Q9UKD2 239 aaKnown RBP13.5□□□□□ -0.25
USP4-203ENST00000415188 SLC6A5Q9Y345 797 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 COL6A6A6NMZ7 2263 aa13.5□□□□□ -0.25
USP4-203ENST00000415188 SHISA3A0PJX4 238 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 ZC3H12DA2A288 527 aaKnown RBP13.49□□□□□ -0.25
USP4-203ENST00000415188 ANKRD61A6NGH8 418 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 HMX3A6NHT5 357 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 B4E171 279 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 SSX4O60224 188 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 REM1O75628 298 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 PRKAR1AP10644 381 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 SLC2A2P11168 524 aaPredicted RBP13.49□□□□□ -0.25
USP4-203ENST00000415188 TSPAN7P41732 249 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 SLC16A1P53985 500 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 PRPS1P60891 318 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 BTG2P78543 158 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 KCNJ8Q15842 424 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 KLHL26Q53HC5 615 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 DMKNQ6E0U4 476 aaPredicted RBP13.49□□□□□ -0.25
USP4-203ENST00000415188 FAAH2Q6GMR7 532 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 WBP2NLQ6ICG8 309 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 SPATC1Q76KD6 591 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 NUP54Q7Z3B4 507 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 PXKQ7Z7A4 578 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 ENKURQ8TC29 256 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 LIPHQ8WWY8 451 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 NKD1Q969G9 470 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 MMABQ96EY8 250 aaPredicted RBP13.49□□□□□ -0.25
USP4-203ENST00000415188 ZDHHC12Q96GR4 267 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 OR1F2PQ96R84 312 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 CNN2Q99439 309 aaKnown RBP13.49□□□□□ -0.25
USP4-203ENST00000415188 DDA1Q9BW61 102 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 MFRPQ9BY79 579 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 C11orf54Q9H0W9 315 aaPredicted RBP13.49□□□□□ -0.25
USP4-203ENST00000415188 SOHLH2Q9NX45 425 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 DTX4Q9Y2E6 619 aa13.49□□□□□ -0.25
USP4-203ENST00000415188 SIRT4Q9Y6E7 314 aaPredicted RBP13.49□□□□□ -0.25
USP4-203ENST00000415188 HRKO00198 91 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 OGG1O15527 345 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 ADAM11O75078 769 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 SC5DO75845 299 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 IL33O95760 270 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 CLPSP04118 112 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 IFNA16P05015 189 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 APEHP13798 732 aaKnown RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 DDOSTP39656 456 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 PPICP45877 212 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 MAP2K3P46734 347 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 GFERP55789 205 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 CAV3P56539 151 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 RPS4XP62701 263 aaKnown RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 MAT1AQ00266 395 aaKnown RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 QPRTQ15274 297 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 TAB1Q15750 504 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 DCAF12Q5T6F0 453 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 FNDC7Q5VTL7 733 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 HACD4Q5VWC8 232 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 RSBN1Q5VWQ0 802 aaPredicted RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 ARL9Q6T311 187 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 B3GLCTQ6Y288 498 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 LRRC28Q86X40 367 aaPredicted RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 Q8N402 240 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 FAM98AQ8NCA5 519 aaKnown RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 OR52E2Q8NGJ4 325 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 OR5M3Q8NGP4 307 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 PHYHIPQ92561 330 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms