RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 RAG2P55895 527 aa9□□□□□ -0.97
SS18-203ENST00000415083 UBE2IP63279 158 aaKnown RBP9□□□□□ -0.97
SS18-203ENST00000415083 GPM6BQ13491 265 aa9□□□□□ -0.97
SS18-203ENST00000415083 MFSD13AQ14CX5 517 aa9□□□□□ -0.97
SS18-203ENST00000415083 ZNF141Q15928 474 aa9□□□□□ -0.97
SS18-203ENST00000415083 ZSWIM7Q19AV6 140 aa9□□□□□ -0.97
SS18-203ENST00000415083 LINC00303Q3SY05 128 aa9□□□□□ -0.97
SS18-203ENST00000415083 ARHGAP11AQ6P4F7 1023 aa9□□□□□ -0.97
SS18-203ENST00000415083 RPL22L1Q6P5R6 122 aaKnown RBP9□□□□□ -0.97
SS18-203ENST00000415083 ZCCHC12Q6PEW1 402 aa9□□□□□ -0.97
SS18-203ENST00000415083 OR4D10Q8NGI6 311 aa9□□□□□ -0.97
SS18-203ENST00000415083 C3orf49Q96BT1 292 aa9□□□□□ -0.97
SS18-203ENST00000415083 AMELYQ99218 206 aa9□□□□□ -0.97
SS18-203ENST00000415083 LIN7BQ9HAP6 207 aa9□□□□□ -0.97
SS18-203ENST00000415083 ZNF224Q9NZL3 707 aa9□□□□□ -0.97
SS18-203ENST00000415083 RPS6KB2Q9UBS0 482 aa9□□□□□ -0.97
SS18-203ENST00000415083 YBX2Q9Y2T7 364 aaKnown RBP9□□□□□ -0.97
SS18-203ENST00000415083 VPS13AQ96RL7 3174 aa9□□□□□ -0.97
SS18-203ENST00000415083 A0A087WUJ7 227 aa9□□□□□ -0.97
SS18-203ENST00000415083 A0A1B0GVT2 93 aa9□□□□□ -0.97
SS18-203ENST00000415083 OR2M5A3KFT3 312 aa9□□□□□ -0.97
SS18-203ENST00000415083 CDC123O75794 336 aaPredicted RBP9□□□□□ -0.97
SS18-203ENST00000415083 RASGRP1O95267 797 aa9□□□□□ -0.97
SS18-203ENST00000415083 PDGFAP04085 211 aa9□□□□□ -0.97
SS18-203ENST00000415083 VSIG10L2P0DP72 767 aa9□□□□□ -0.97
SS18-203ENST00000415083 ST6GAL1P15907 406 aa9□□□□□ -0.97
SS18-203ENST00000415083 ANXA7P20073 488 aaKnown RBP9□□□□□ -0.97
SS18-203ENST00000415083 SLC6A6P31641 620 aa9□□□□□ -0.97
SS18-203ENST00000415083 P2RX1P51575 399 aa9□□□□□ -0.97
SS18-203ENST00000415083 ACTC1P68032 377 aa9□□□□□ -0.97
SS18-203ENST00000415083 ACTA1P68133 377 aa9□□□□□ -0.97
SS18-203ENST00000415083 CD226Q15762 336 aa9□□□□□ -0.97
SS18-203ENST00000415083 FNDC7Q5VTL7 733 aa9□□□□□ -0.97
SS18-203ENST00000415083 ZNF321PQ8N8H1 164 aa9□□□□□ -0.97
SS18-203ENST00000415083 SPERTQ8NA61 448 aa9□□□□□ -0.97
SS18-203ENST00000415083 OR52B4Q8NGK2 314 aa9□□□□□ -0.97
SS18-203ENST00000415083 MARVELD3Q96A59 401 aa9□□□□□ -0.97
SS18-203ENST00000415083 SFXN1Q9H9B4 322 aa9□□□□□ -0.97
SS18-203ENST00000415083 TMEM27Q9HBJ8 222 aa9□□□□□ -0.97
SS18-203ENST00000415083 KCNN3Q9UGI6 736 aa9□□□□□ -0.97
SS18-203ENST00000415083 FREM2Q5SZK8 3169 aa9□□□□□ -0.97
SS18-203ENST00000415083 ZNF879B4DU55 563 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 TEX46H3BTG2 121 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 AIPO00170 330 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 PBX2P40425 430 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 ZNF81P51508 661 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 EFNB2P52799 333 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 MAT1AQ00266 395 aaKnown RBP8.99□□□□□ -0.97
SS18-203ENST00000415083 RPL6Q02878 288 aaKnown RBP8.99□□□□□ -0.97
SS18-203ENST00000415083 ZNF542PQ5EBM4 170 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 ABHD13Q7L211 337 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 OR56B4Q8NH76 319 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 RSC1A1Q92681 617 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 OR1F2PQ96R84 312 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 ING4Q9UNL4 249 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 PLSCR5A0PG75 271 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 ANKRD20A5PA0PJZ0 165 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 OR5K3A6NET4 321 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 H3BSH0 61 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 NDUFB2O95178 105 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 CDK2P24941 298 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 TLX1P31314 330 aaPredicted RBP8.99□□□□□ -0.97
SS18-203ENST00000415083 AANATQ16613 207 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 HSD17B12Q53GQ0 312 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 SFRP5Q5T4F7 317 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 CBLN3Q6UW01 205 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 TMEM92Q6UXU6 159 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 ZNF784Q8NCA9 323 aaPredicted RBP8.99□□□□□ -0.97
SS18-203ENST00000415083 CAMKVQ8NCB2 501 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 ATOH1Q92858 354 aaPredicted RBP8.99□□□□□ -0.97
SS18-203ENST00000415083 MRPL39Q9NYK5 338 aaKnown RBP8.99□□□□□ -0.97
SS18-203ENST00000415083 KNL1Q8NG31 2342 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 PEX14O75381 377 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 RGS11O94810 467 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 SLC35E2P0CK97 266 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 OR8G3PP0DMU2 310 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 DNASE1P24855 282 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 GPR3P46089 330 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 DHODHQ02127 395 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 COL28A1Q2UY09 1125 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 SAMD14Q8IZD0 417 aaPredicted RBP8.99□□□□□ -0.97
SS18-203ENST00000415083 PRSS35Q8N3Z0 413 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 CSNK1A1LQ8N752 337 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 THEM6Q8WUY1 208 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 SIPA1Q96FS4 1042 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 ING1Q9UK53 422 aaPredicted RBP8.99□□□□□ -0.97
SS18-203ENST00000415083 BAIAP2Q9UQB8 552 aa8.99□□□□□ -0.97
SS18-203ENST00000415083 H7C1C5 153 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 CDK2AP1O14519 115 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 ARPC1BO15143 372 aaKnown RBP8.98□□□□□ -0.97
SS18-203ENST00000415083 GATBO75879 557 aaKnown RBP8.98□□□□□ -0.97
SS18-203ENST00000415083 TGM6O95932 706 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 WNT11O96014 354 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 NAT1P18440 290 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 AQP2P41181 271 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 BLVRAP53004 296 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 LCN6P62502 163 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 POU4F2Q12837 409 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 C9orf50Q5SZB4 431 aa8.98□□□□□ -0.97
SS18-203ENST00000415083 STAC2Q6ZMT1 411 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms