RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 AP5S1Q9NUS5 200 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 TRIP12Q14669 1992 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 BMI1P35226 326 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 PPP2CBP62714 309 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 OR6V1Q8N148 313 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ZFP90Q8TF47 636 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 GALNT9Q9HCQ5 603 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 INIPQ9NRY2 104 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 APC2O95996 2303 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 HSD17B6O14756 317 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ACSM4P0C7M7 580 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 LMO2P25791 158 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 SYT6Q5T7P8 510 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 DVL3Q92997 716 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 PURBQ96QR8 312 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 B3GAT1Q9P2W7 334 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 RNASEK-C17orf49H0YIS7 233 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 FAM57BQ71RH2 274 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 UBE3DQ7Z6J8 389 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 OR13D1Q8NGV5 346 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 SCARB1Q8WTV0 552 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF689Q96CS4 500 aaPredicted RBP12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 FBXL18Q96ME1 805 aa12.47□□□□□ -0.41
CCDC88A-204ENST00000413716 AGLP35573 1532 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 TGFB1I1O43294 461 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 REEP5Q00765 189 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 TEKQ02763 1124 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 ZNF805Q5CZA5 627 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 CISD2Q8N5K1 135 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 FAAP24Q9BTP7 215 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 WWTR1Q9GZV5 400 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 ABOP16442 354 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 KCNQ1P51787 676 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 HSD17B14Q9BPX1 270 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 ACSS1Q9NUB1 689 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 OR7C1O76099 320 aaPredicted RBP12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 FOLR3P41439 243 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 HAGHQ16775 308 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 MS4A13Q5J8X5 152 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 CDC20BQ86Y33 519 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 OR9Q2Q8NGE9 314 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 AKR7LQ8NHP1 331 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 TANKQ92844 425 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 PEX11GQ96HA9 241 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 IKZF5Q9H5V7 419 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 RARRES3Q9UL19 164 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 LRRC3CA6NJW4 275 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 LGALS8O00214 317 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 RPL17P18621 184 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 ARNTP27540 789 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 TUSC5Q8IXB3 177 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 ADAMTS16Q8TE57 1224 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 MOCOSQ96EN8 888 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 IER3IP1Q9Y5U9 82 aa12.46□□□□□ -0.41
CCDC88A-204ENST00000413716 AQP7P3A6NL99 342 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 LALBAP00709 142 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 HTR4Q13639 388 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 LTB4RQ15722 352 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 CDH26Q8IXH8 852 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 KLK4Q9Y5K2 254 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 CSNK1G3Q9Y6M4 447 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 MYO16Q9Y6X6 1858 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 F7P08709 466 aaPredicted RBP12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 GM2AP17900 193 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 DIO3P55073 304 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 HYAL4Q2M3T9 481 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 RABEPKQ7Z6M1 372 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 CLEC4CQ8WTT0 213 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 TCRBV7S3A2A0A539 114 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 BMP2P12643 396 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 DUSP1P28562 367 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 SIM1P81133 766 aaPredicted RBP12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 ADGRG5Q8IZF4 528 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 GPR62Q9BZJ7 368 aa12.46□□□□□ -0.42
CCDC88A-204ENST00000413716 JTBO76095 146 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 NME1P15531 152 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 CORO6Q6QEF8 472 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 HSD17B11Q8NBQ5 300 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 TMEM19Q96HH6 336 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 TMEM184BQ9Y519 407 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 ANTXRLA6NF34 631 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 ORM1P02763 201 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 BCL6P41182 706 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 GPM6BQ13491 265 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 SERTAD2Q14140 314 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 FBXL22Q6P050 247 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 NPSR1Q6W5P4 371 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 NLRC3Q7RTR2 1065 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 GPR119Q8TDV5 335 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 C8orf33Q9H7E9 229 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 OSGIN1Q9UJX0 560 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 PMS2P2O95744 297 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 SHC2P98077 582 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 ILKQ13418 452 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 MOGAT2Q3SYC2 334 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 CMPK2Q5EBM0 449 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 MFSD12Q6NUT3 480 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 ABHD15Q6UXT9 468 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 OR2A1Q8NGT9 310 aa12.45□□□□□ -0.42
CCDC88A-204ENST00000413716 IMP4Q96G21 291 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms