RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 NGBQ9NPG2 151 aa16.71■□□□□ 0.27
SF3A1-202ENST00000411423 MED4Q9NPJ6 270 aa16.71■□□□□ 0.27
SF3A1-202ENST00000411423 LAMP3Q9UQV4 416 aa16.71■□□□□ 0.27
SF3A1-202ENST00000411423 CADP27708 2225 aa16.71■□□□□ 0.27
SF3A1-202ENST00000411423 FLNAP21333 2647 aaKnown RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 CPSF4LA6NMK7 179 aaKnown RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 TRAF3IP2O43734 574 aaPredicted RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 VAMP5O95183 116 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 C8BP07358 591 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 CDH2P19022 906 aaPredicted RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 TNFRSF1BP20333 461 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 CLDN17P56750 224 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 CYLC2Q14093 348 aaPredicted RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 HIKESHIQ53FT3 197 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 HSP90B2PQ58FF3 399 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 ENTPD8Q5MY95 495 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 SHEQ5VZ18 495 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 NHLRC1Q6VVB1 395 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 B3GLCTQ6Y288 498 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 PATL1Q86TB9 770 aaKnown RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 RANBP3LQ86VV4 465 aaPredicted RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 RCN3Q96D15 328 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 SLC41A3Q96GZ6 507 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 NELFAQ9H3P2 528 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 ZNF701Q9NV72 531 aaPredicted RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 SLC13A4Q9UKG4 626 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 MAGED1Q9Y5V3 778 aaPredicted RBP16.7■□□□□ 0.26
SF3A1-202ENST00000411423 ZFHX3Q15911 3703 aa16.7■□□□□ 0.26
SF3A1-202ENST00000411423 BBIP1A8MTZ0 92 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 OVOL3O00110 214 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 AIM2O14862 343 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 FMO6PO60774 539 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 CD8AP01732 235 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 PAX1P15863 534 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 MMEL1Q495T6 779 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 PHYHD1Q5SRE7 291 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 OR7E24Q6IFN5 339 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 YTHDF3Q7Z739 585 aaKnown RBP16.69■□□□□ 0.26
SF3A1-202ENST00000411423 POMGNT2Q8NAT1 580 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 C1orf162Q8NEQ5 155 aaPredicted RBP16.69■□□□□ 0.26
SF3A1-202ENST00000411423 TMEM171Q8WVE6 324 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 FBXW5Q969U6 566 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 ZNF837Q96EG3 531 aaPredicted RBP16.69■□□□□ 0.26
SF3A1-202ENST00000411423 Q96MF0 132 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 OXGR1Q96P68 337 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 CAPN7Q9Y6W3 813 aa16.69■□□□□ 0.26
SF3A1-202ENST00000411423 M0R1B8 84 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 OR2T1O43869 369 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 CD40P25942 277 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 GTF2E2P29084 291 aaKnown RBP16.68■□□□□ 0.26
SF3A1-202ENST00000411423 ZNF613Q6PF04 617 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 C5orf46Q6UWT4 87 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 H1FNTQ75WM6 255 aaPredicted RBP16.68■□□□□ 0.26
SF3A1-202ENST00000411423 TREML1Q86YW5 311 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 SLC30A8Q8IWU4 369 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 OR1K1Q8NGR3 316 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 OR6S1Q8NH40 331 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 ADAMTS16Q8TE57 1224 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 SMAP2Q8WU79 429 aaPredicted RBP16.68■□□□□ 0.26
SF3A1-202ENST00000411423 BOD1Q96IK1 185 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 TMEM43Q9BTV4 400 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 EVA1AQ9H8M9 152 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 NF1P21359 2839 aa16.68■□□□□ 0.26
SF3A1-202ENST00000411423 TRIM64A6NGJ6 449 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 TRIM64BA6NI03 449 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 E7EQL1 145 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 CHP2O43745 196 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 SHOX2O60902 331 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-202ENST00000411423 ZNF43P17038 809 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 CDKN1AP38936 164 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 CDH11P55287 796 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 RPS4XP62701 263 aaKnown RBP16.67■□□□□ 0.26
SF3A1-202ENST00000411423 MAPRE2Q15555 327 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 SWT1Q5T5J6 900 aaKnown RBP16.67■□□□□ 0.26
SF3A1-202ENST00000411423 TMEM123Q8N131 208 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 PIAS4Q8N2W9 510 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-202ENST00000411423 C17orf78Q8N4C9 275 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 ADPRHL1Q8NDY3 354 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 BCL2L2Q92843 193 aaPredicted RBP16.67■□□□□ 0.26
SF3A1-202ENST00000411423 TXNDC15Q96J42 360 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 OR2M2Q96R28 347 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 ECSITQ9BQ95 431 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 PRSS27Q9BQR3 290 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 LINC00470Q9BZP3 86 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 PCDHAC1Q9H158 963 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 CMTM6Q9NX76 183 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 CISD1Q9NZ45 108 aaKnown RBP16.67■□□□□ 0.26
SF3A1-202ENST00000411423 SLC7A7Q9UM01 511 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 B3GALT5Q9Y2C3 310 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 USF3Q68DE3 2245 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 MTORP42345 2549 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 ARID1AO14497 2285 aa16.67■□□□□ 0.26
SF3A1-202ENST00000411423 LOC102725191A0A1B0GVB3 256 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 NPPAP01160 153 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 FUT4P22083 530 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 SEC24CP53992 1094 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 TUBA1BP68363 451 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 TUBA4AP68366 448 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 ROR2Q01974 943 aaKnown RBP16.66■□□□□ 0.26
SF3A1-202ENST00000411423 TBRG1Q3YBR2 411 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms