RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 IVDP26440 423 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 BAP18Q8IXM2 172 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 TMEM156Q8N614 296 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 KIRREL1Q96J84 757 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 SLC9B1P1A6NJY1 282 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 PEX10O60683 326 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 GDF5P43026 501 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 IAH1Q2TAA2 248 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-206ENST00000409809 RPUSD3Q6P087 351 aaKnown RBP12.03□□□□□ -0.48
COL6A3-206ENST00000409809 C2orf73Q8N5S3 287 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-206ENST00000409809 KHSRPQ92945 711 aaKnown RBP eCLIP12.03□□□□□ -0.48
COL6A3-206ENST00000409809 GSTO2Q9H4Y5 243 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 A8MU76 341 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 CA12O43570 354 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 SLC10A6Q3KNW5 377 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 LRRC73Q5JTD7 316 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 SMIM3Q9BZL3 60 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 C11orf98E9PRG8 122 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 OPN1MWP04001 364 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 OPN1MW2P0DN77 364 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 OPN1MW3P0DN78 364 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 CYP27C1Q4G0S4 372 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 BRI3BPQ8WY22 251 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 SUSD3Q96L08 255 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 SOX7Q9BT81 388 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 PARD6AQ9NPB6 346 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 AK3Q9UIJ7 227 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 RALYQ9UKM9 306 aaKnown RBP12.03□□□□□ -0.48
COL6A3-206ENST00000409809 MAST2Q6P0Q8 1798 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 DEDDO75618 318 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 HOXB5P09067 269 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 ARAFP10398 606 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 SOWAHAQ2M3V2 549 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 TMEM97Q5BJF2 176 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 WBP2NLQ6ICG8 309 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 LMX1AQ8TE12 382 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 LNP1A1A4G5 178 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 RFPL4AA6NLU0 287 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 RFPL4AL1F8VTS6 287 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 KLK3P07288 261 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-206ENST00000409809 CT45A10P0DMU9 189 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 ADCYAP1R1P41586 468 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 PLCXD2Q0VAA5 305 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 SGCAQ16586 387 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 GALNT16Q8N428 558 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 SDSLQ96GA7 329 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 MRGPRX2Q96LB1 330 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 GALNT9Q9HCQ5 603 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 BRWD1Q9NSI6 2320 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 GPR32O75388 356 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 CTXN1P60606 82 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 ETFRF1Q6IPR1 90 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 RNF111Q6ZNA4 994 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 CIB3Q96Q77 187 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-206ENST00000409809 SRRQ9GZT4 340 aa12.02□□□□□ -0.48
COL6A3-206ENST00000409809 SOX15O60248 233 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 ZNF728P0DKX0 622 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 CSKP41240 450 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 ELOCQ15369 112 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM107Q6UX40 140 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 TECPR1Q7Z6L1 1165 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM218A2RU14 115 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 PPP1R3DO95685 299 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 NADSYN1Q6IA69 706 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 GPR137CQ8N3F9 429 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 ATG101Q9BSB4 218 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 CXXC1Q9P0U4 656 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-206ENST00000409809 RABGGTBP53611 331 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM115Q12893 351 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-206ENST00000409809 PSRC1Q6PGN9 363 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-206ENST00000409809 TAS2R5Q9NYW4 299 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 ZNF724A8MTY0 619 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 PDE7AQ13946 482 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 GKN2Q86XP6 184 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 DVL3Q92997 716 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-206ENST00000409809 SGCZQ96LD1 299 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 MRPS17Q9Y2R5 130 aaKnown RBP12.02□□□□□ -0.49
COL6A3-206ENST00000409809 HMSDA8MTL9 139 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 IL5P05113 134 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 FASLGP48023 281 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 ARL16Q0P5N6 197 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 VITQ6UXI7 678 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 SPICQ8N5J4 248 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 ALG12Q9BV10 488 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 TTTY10Q9BZA0 68 aa12.02□□□□□ -0.49
COL6A3-206ENST00000409809 ARHGEF17Q96PE2 2063 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 KIR2DS1A0A191URI9 304 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 FOXE1O00358 373 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 PHOX2AO14813 284 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 PAPLNO95428 1278 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 KIR2DS4P43632 304 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 RPS18P62269 152 aaKnown RBP12.01□□□□□ -0.49
COL6A3-206ENST00000409809 FOXO1Q12778 655 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 KIR2DS1Q14954 304 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 FFAR4Q5NUL3 377 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM130Q8N3G9 435 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 RAB24Q969Q5 203 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 ZNF727A8MUV8 499 aa12.01□□□□□ -0.49
COL6A3-206ENST00000409809 DCTN6O00399 190 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms