RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SURF4O15260 269 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 OIP5O43482 229 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 HCRTR2O43614 444 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 GMFGO60234 142 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 LYPD3O95274 346 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 UBL4AP11441 157 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 MYL12AP19105 171 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 HTR2AP28223 471 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 GPR4P46093 362 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 PRKCDQ05655 676 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 TMED1Q13445 227 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 SSX1Q16384 188 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 CBLN3Q6UW01 205 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 PLCZ1Q86YW0 608 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 ZFP62Q8NB50 900 aaPredicted RBP12.15□□□□□ -0.47
LIMS1-204ENST00000409441 OR4Q3Q8NH05 313 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 CHCHD6Q9BRQ6 235 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 LAT2Q9GZY6 243 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 TMEM27Q9HBJ8 222 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 FAIMQ9NVQ4 179 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 LUZP4Q9P127 313 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 CLEC2DQ9UHP7 191 aa12.15□□□□□ -0.47
LIMS1-204ENST00000409441 BOKQ9UMX3 212 aaPredicted RBP12.15□□□□□ -0.47
LIMS1-204ENST00000409441 ATMQ13315 3056 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 EXPH5Q8NEV8 1989 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 IGLV3-32A0A0A0MS00 114 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 TMEM129A0AVI4 362 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 UNC119BA6NIH7 251 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 B4DXG7 233 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 PIP5K1CO60331 668 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 EIF4E2O60573 245 aaKnown RBP12.14□□□□□ -0.47
LIMS1-204ENST00000409441 CBR3O75828 277 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 SULT1C4O75897 302 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 BMP4P12644 408 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 MSX1P28360 303 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 SOX6P35712 828 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 TGFBR1P36897 503 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 RFC3P40938 356 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 MTNR1AP48039 350 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 PLAURQ03405 335 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF117Q03924 483 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 INAQ16352 499 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 RGS21Q2M5E4 152 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 RPUSD3Q6P087 351 aaKnown RBP12.14□□□□□ -0.47
LIMS1-204ENST00000409441 BCDIN3DQ7Z5W3 292 aaKnown RBP12.14□□□□□ -0.47
LIMS1-204ENST00000409441 MEX3DQ86XN8 651 aaKnown RBP12.14□□□□□ -0.47
LIMS1-204ENST00000409441 CDK20Q8IZL9 346 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 SLC43A2Q8N370 569 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 MINDY2Q8NBR6 621 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 FAM98AQ8NCA5 519 aaKnown RBP12.14□□□□□ -0.47
LIMS1-204ENST00000409441 OR2T33Q8NG76 320 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 B4GALNT2Q8NHY0 566 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 TMEM239Q8WW34 195 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 RNFT2Q96EX2 444 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 COX4I2Q96KJ9 171 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 NDUFB11Q9NX14 153 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 DNAJB12Q9NXW2 375 aaKnown RBP12.14□□□□□ -0.47
LIMS1-204ENST00000409441 FBXL2Q9UKC9 423 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 ICAM5Q9UMF0 924 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 HRH3Q9Y5N1 445 aa12.14□□□□□ -0.47
LIMS1-204ENST00000409441 LRRC3CA6NJW4 275 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 KPNA4O00629 521 aaPredicted RBP12.13□□□□□ -0.47
LIMS1-204ENST00000409441 RFPL3SP0C7P2 107 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 PRG2P13727 222 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 PSMA1P25786 263 aaKnown RBP12.13□□□□□ -0.47
LIMS1-204ENST00000409441 CD40LGP29965 261 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 RBM34P42696 430 aaKnown RBP12.13□□□□□ -0.47
LIMS1-204ENST00000409441 CTBP2P56545 445 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 WNT4P56705 351 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 PMP22Q01453 160 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 PLGLB1Q02325 96 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 KLRB1Q12918 225 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 SKP2Q13309 424 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 AADACL4Q5VUY2 407 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 TMPRSS11FQ6ZWK6 438 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF550Q7Z398 422 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 FADS6Q8N9I5 356 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 FAM71CQ8NEG0 241 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 OR2M3Q8NG83 312 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 OR4K17Q8NGC6 315 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 CENPOQ9BU64 300 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 TTTY12Q9BZ98 90 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 TRIM2Q9C040 744 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 FN3KQ9H479 309 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 STUB1Q9UNE7 303 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 EML6Q6ZMW3 1958 aa12.13□□□□□ -0.47
LIMS1-204ENST00000409441 CHP2O43745 196 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 PFDN1O60925 122 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 GLSO94925 669 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-204ENST00000409441 RCBTB2O95199 551 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 GKN3PP0CG01 181 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 P2RX1P51575 399 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 CDH11P55287 796 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 PPIAP62937 165 aaKnown RBP12.12□□□□□ -0.47
LIMS1-204ENST00000409441 ITGADQ13349 1161 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 HYAL4Q2M3T9 481 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 RNFT1Q5M7Z0 435 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 NXNL2Q5VZ03 156 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 DCDC5Q6ZRR9 648 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 GID4Q8IVV7 300 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms