RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 MIB2Q96AX9 1013 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 SARAFQ96BY9 339 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 ZNF587Q96SQ5 575 aaPredicted RBP12.77□□□□□ -0.37
SKA1-202ENST00000398452 PTDSS2Q9BVG9 487 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 PRRG4Q9BZD6 226 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 CHST11Q9NPF2 352 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 NPIPA1Q9UND3 350 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 B3GALT5Q9Y2C3 310 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 LRCH1Q9Y2L9 728 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 HIF3AQ9Y2N7 669 aa12.77□□□□□ -0.37
SKA1-202ENST00000398452 TLN1Q9Y490 2541 aaKnown RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 A0A1W2PRG6 482 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 ZAR1LA6NP61 321 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 MCIDASD6RGH6 385 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 C11orf98E9PRG8 122 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 K7EM74 188 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 TNFSF11O14788 317 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 DENRO43583 198 aaKnown RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 PTP4A3O75365 173 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 SERPINI2O75830 405 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 IMPDH2P12268 514 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 ENPP1P22413 925 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 GGT2P36268 569 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 POLR2IP36954 125 aaKnown RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 AQP2P41181 271 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 GIPRP48546 466 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 STARP49675 285 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 CTXN1P60606 82 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 ADARB1P78563 741 aaKnown RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 PUDPQ08623 228 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 KLRB1Q12918 225 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 SNAPC1Q16533 368 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 NADK2Q4G0N4 442 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 SLX4IPQ5VYV7 408 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 ARHGAP11AQ6P4F7 1023 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 DPY19L2P2Q6ZN68 376 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 TRILQ7L0X0 811 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 KIF18BQ86Y91 864 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 PM20D2Q8IYS1 436 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 CPNE4Q96A23 557 aaPredicted RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 HRASLS5Q96KN8 279 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 POLDIP3Q9BY77 421 aaKnown RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 ANKRD60Q9BZ19 345 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 SLC25A18Q9H1K4 315 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 TSPAN10Q9H1Z9 355 aaPredicted RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 SLC25A19Q9HC21 320 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 INIPQ9NRY2 104 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 TVP23BQ9NYZ1 205 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 LUZP4Q9P127 313 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 MCTS1Q9ULC4 181 aaKnown RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 HSPE1-MOB4S4R3N1 261 aa12.76□□□□□ -0.37
SKA1-202ENST00000398452 SETXQ7Z333 2677 aaKnown RBP12.76□□□□□ -0.37
SKA1-202ENST00000398452 A0A0J9YW62 118 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 SNTNA6NMZ2 147 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 RIIAD1A6NNX1 92 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 FTCDNL1E5RQL4 147 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 DLGAP1O14490 977 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 IDH3BO43837 385 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 AKR7A3O95154 331 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 VAMP5O95183 116 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 WISP1O95388 367 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 IGHG3P01860 377 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 SHC1P29353 583 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 RAC3P60763 192 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 MYBPC1Q00872 1141 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 LTBQ06643 244 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 RPL18Q07020 188 aaKnown RBP12.75□□□□□ -0.37
SKA1-202ENST00000398452 SF3B4Q15427 424 aaKnown RBP eCLIP12.75□□□□□ -0.371e-6■■■□□ 16.5
SKA1-202ENST00000398452 PGGHGQ32M88 737 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 KRTCAP3Q53RY4 240 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 CMPK2Q5EBM0 449 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 TMEM236Q5W0B7 351 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 PAQR6Q6TCH4 344 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 PTCHD4Q6ZW05 846 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 HDDC2Q7Z4H3 204 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 THAP5Q7Z6K1 395 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 JAZF1Q86VZ6 243 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 UEVLDQ8IX04 471 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 GHDCQ8N2G8 530 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 ADPRHL1Q8NDY3 354 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 TRUB1Q8WWH5 349 aaKnown RBP12.75□□□□□ -0.37
SKA1-202ENST00000398452 ERMAPQ96PL5 475 aaPredicted RBP12.75□□□□□ -0.37
SKA1-202ENST00000398452 PITX2Q99697 317 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 MCCC2Q9HCC0 563 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 H2AFY2Q9P0M6 372 aaPredicted RBP12.75□□□□□ -0.37
SKA1-202ENST00000398452 GRHPRQ9UBQ7 328 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 IL20RAQ9UHF4 553 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 KLHL21Q9UJP4 597 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 NDRG4Q9ULP0 352 aaKnown RBP12.75□□□□□ -0.37
SKA1-202ENST00000398452 CAMK2AQ9UQM7 478 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 RASD1Q9Y272 281 aa12.75□□□□□ -0.37
SKA1-202ENST00000398452 NPIPA2E9PIF3 369 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 NPIPA3F8WFD2 350 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PLPP3O14495 311 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 AQP7O14520 342 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 XKRYO14609 159 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 AKAP8O43823 692 aaKnown RBP12.74□□□□□ -0.37
SKA1-202ENST00000398452 CXCL13O43927 109 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PPP1R3DO95685 299 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 CD14P08571 375 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms