RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 TPRA1Q86W33 373 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 LRRC56Q8IYG6 542 aaPredicted RBP13.9□□□□□ -0.18
NPHP4-201ENST00000378156 DNAJC5GQ8N7S2 189 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 ZNF611Q8N823 705 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 TMEM255BQ8WV15 326 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 C3orf49Q96BT1 292 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 LRRC46Q96FV0 321 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 SENP5Q96HI0 755 aaPredicted RBP13.9□□□□□ -0.18
NPHP4-201ENST00000378156 OR52A5Q9H2C5 316 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 RANGRFQ9HD47 186 aaPredicted RBP13.9□□□□□ -0.18
NPHP4-201ENST00000378156 SLC23A2Q9UGH3 650 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 ZNF736B4DX44 427 aaPredicted RBP13.9□□□□□ -0.18
NPHP4-201ENST00000378156 DCNP07585 359 aaKnown RBP13.9□□□□□ -0.18
NPHP4-201ENST00000378156 LIM2P55344 173 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 OR1D5P58170 312 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 SMAD4Q13485 552 aaKnown RBP13.9□□□□□ -0.18
NPHP4-201ENST00000378156 MBOAT2Q6ZWT7 520 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 PGAP1Q75T13 922 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 PRICKLE2Q7Z3G6 844 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 NLRP8Q86W28 1048 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 MSRB3Q8IXL7 192 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 KCTD12Q96CX2 325 aaKnown RBP13.9□□□□□ -0.18
NPHP4-201ENST00000378156 LYRM4Q9HD34 91 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 MAN2C1Q9NTJ4 1040 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 MED16Q9Y2X0 877 aa13.9□□□□□ -0.18
NPHP4-201ENST00000378156 A0A0A6YYH2 397 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 A6NJ64 397 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 TMPRSS11DO60235 418 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 HOXB9P17482 250 aaPredicted RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 GPLD1P80108 840 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 OR14A2Q96R54 314 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 KATNB1Q9BVA0 655 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 CHRDQ9H2X0 955 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 MED17Q9NVC6 651 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 NXT1Q9UKK6 140 aaKnown RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 ICKQ9UPZ9 632 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 ANKRD31Q8N7Z5 1873 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 hCG_1807616A0A1W2PRN6 198 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 BMP1P13497 986 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 POU3F2P20265 443 aaPredicted RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 OPRD1P41143 372 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 PPP2CBP62714 309 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 PPP2CAP67775 309 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 TMEM244Q5VVB8 128 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 FAM160A2Q8N612 972 aaPredicted RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 OR56B2PQ8NGI1 322 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 OR56B4Q8NH76 319 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 ATOH1Q92858 354 aaPredicted RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 RRNAD1Q96FB5 475 aaKnown RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 TNFRSF13CQ96RJ3 184 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 PRDM9Q9NQV7 894 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 CXorf51AA0A1B0GTR3 108 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 A0A1B0GWA3 101 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 LINC01565O15544 149 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 HSD17B7P56937 341 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 DYRK1AQ13627 763 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 OXA1LQ15070 435 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 NIPAL2Q9H841 368 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 CDH20Q9HBT6 801 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 FAM230AA0A1W2PPH8 454 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 SGCEO43556 437 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 ZNF254O75437 659 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 GIFP27352 417 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 SNU13P55769 128 aaKnown RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 SMAD2Q15796 467 aaKnown RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 LIX1LQ8IVB5 337 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 C12orf45Q8N5I9 185 aaPredicted RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 DYNC2LI1Q8TCX1 351 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 GLYATL2Q8WU03 294 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 ARL5BQ96KC2 179 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 GABARAPL3Q9BY60 117 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 MYEF2Q9P2K5 600 aaKnown RBP13.89□□□□□ -0.19
NPHP4-201ENST00000378156 HHLA2Q9UM44 414 aa13.89□□□□□ -0.19
NPHP4-201ENST00000378156 HMGN4O00479 90 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 NUPL2O15504 423 aaKnown RBP13.88□□□□□ -0.19
NPHP4-201ENST00000378156 TRIM23P36406 574 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 RAB5CP51148 216 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 EPHA5P54756 1037 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 USP51Q70EK9 711 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 SGPP2Q8IWX5 399 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 RADILQ96JH8 1075 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 IFNGR1P15260 489 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 SLC2A5P22732 501 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 CCR5P51681 352 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 TMEM176BQ3YBM2 270 aaPredicted RBP13.88□□□□□ -0.19
NPHP4-201ENST00000378156 PAQR6Q6TCH4 344 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 SMAP2Q8WU79 429 aaPredicted RBP13.88□□□□□ -0.19
NPHP4-201ENST00000378156 CCNL2Q96S94 520 aaPredicted RBP13.88□□□□□ -0.19
NPHP4-201ENST00000378156 NOX3Q9HBY0 568 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 GLTPQ9NZD2 209 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 KCNS2Q9ULS6 477 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 NEU3Q9UQ49 428 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 A0A1W2PR48 441 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 IGHG1P01857 330 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 TAS2R20P59543 309 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 SNRPGP62308 76 aaKnown RBP13.88□□□□□ -0.19
NPHP4-201ENST00000378156 SAXO2Q658L1 398 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 MISPQ8IVT2 679 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 TERB2Q8NHR7 220 aa13.88□□□□□ -0.19
NPHP4-201ENST00000378156 PRMT8Q9NR22 394 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms