RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 OR3A2P47893 321 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 LCN8Q6JVE9 175 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZNF295-AS1Q8N0V1 137 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZIC4Q8N9L1 334 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 PFN4Q8NHR9 129 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 LINC01560Q8TB33 94 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 CANT1Q8WVQ1 401 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZNF385AQ96PM9 386 aaKnown RBP13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 MAN2C1Q9NTJ4 1040 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 NOSIPQ9Y314 301 aaKnown RBP13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 UNC79Q9P2D8 2635 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 CENPEQ02224 2701 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 TCRBV3S1A0A5B6 114 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 PIP5K1CO60331 668 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 SEMG1P04279 462 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 PTDSS1P48651 473 aaKnown RBP13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 LSM11P83369 360 aaKnown RBP eCLIP13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 VLDLRP98155 873 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 SORDQ00796 357 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 LRRC36Q1X8D7 754 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 TMEM225Q6GV28 225 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 C10orf53Q8N6V4 93 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 OR6S1Q8NH40 331 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 NRG4Q8WWG1 115 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 C7orf34Q96L11 122 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 SEPHS2Q99611 448 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 CRIM1Q9NZV1 1036 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 C6orf203Q9P0P8 240 aaPredicted RBP13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 B3GAT1Q9P2W7 334 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 ENO4A6NNW6 628 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 hCG_2039718K7EN88 272 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 GPR171O14626 319 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 DIRAS1O95057 198 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 CH25HO95992 272 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 HPRP00739 348 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 IGHV3-9P01782 118 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZNF74Q16587 644 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZFP1Q6P2D0 407 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 STK32CQ86UX6 486 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 KIF18BQ86Y91 864 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 OFCC1Q8IZS5 231 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 GABRG1Q8N1C3 465 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 LRRC17Q8N6Y2 441 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 TMEM239Q8WW34 195 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 SLCO4A1Q96BD0 722 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 PYURFQ96I23 114 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 SF3B5Q9BWJ5 86 aaKnown RBP13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 MUC13Q9H3R2 512 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 C20orf141Q9NUB4 165 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 AP4S1Q9Y587 144 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 ENPP4Q9Y6X5 453 aa13.35□□□□□ -0.27
SMPDL3A-201ENST00000368440 PKDREJQ9NTG1 2253 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 DHRS12A0PJE2 317 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 MS4A18H0YCH9 400 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 TIPRLO75663 272 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 MT-ND1P03886 318 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 THRBP10828 461 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 UGT2B10P36537 528 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 RBM34P42696 430 aaKnown RBP13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 KIR2DL3P43628 341 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 ST3GAL3Q11203 375 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 TSC22D1Q15714 1073 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 MS4A18Q3C1V0 323 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 IQCCQ4KMZ1 466 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 CASP12Q6UXS9 341 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 STAC2Q6ZMT1 411 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 BEND4Q6ZU67 534 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 CREB3L2Q70SY1 520 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 H1FNTQ75WM6 255 aaPredicted RBP13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 SLC46A3Q7Z3Q1 461 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 CXorf67Q86X51 503 aaPredicted RBP13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 EPHX4Q8IUS5 362 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZNF100Q8IYN0 542 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 SLC19A3Q9BZV2 496 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 KLHL4Q9C0H6 718 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 ELOVL5Q9NYP7 299 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 NDUFAF4Q9P032 175 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 RASD1Q9Y272 281 aa13.34□□□□□ -0.27
SMPDL3A-201ENST00000368440 TCRBV5S2A0A599 114 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 TUBAL3A6NHL2 446 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 AQP12BA6NM10 295 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 LPCAT4Q643R3 524 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 ANKRD34AQ69YU3 496 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 C22orf34Q6ZV56 151 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 AQP12AQ8IXF9 295 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 TMEM45BQ96B21 275 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 PKP2Q99959 881 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 FNDC11Q9BVV2 318 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 ASPNQ9BXN1 380 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 SEMA6AQ9H2E6 1030 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 MRPL39Q9NYK5 338 aaKnown RBP13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 B3GALT5Q9Y2C3 310 aa13.33□□□□□ -0.27
SMPDL3A-201ENST00000368440 MRPL33O75394 65 aaKnown RBP13.33□□□□□ -0.28
SMPDL3A-201ENST00000368440 VAMP5O95183 116 aa13.33□□□□□ -0.28
SMPDL3A-201ENST00000368440 ADAP00813 363 aa13.33□□□□□ -0.28
SMPDL3A-201ENST00000368440 MT-ATP6P00846 226 aa13.33□□□□□ -0.28
SMPDL3A-201ENST00000368440 HLA-DOBP13765 273 aa13.33□□□□□ -0.28
SMPDL3A-201ENST00000368440 FOXG1P55316 489 aaPredicted RBP13.33□□□□□ -0.28
SMPDL3A-201ENST00000368440 MFSD13AQ14CX5 517 aa13.33□□□□□ -0.28
SMPDL3A-201ENST00000368440 POU4F3Q15319 338 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms