RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ANGPTL6Q8NI99 470 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 NT5CQ8TCD5 201 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 THEM6Q8WUY1 208 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 HERVK_113Q902F9 699 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 S100A16Q96FQ6 103 aaKnown RBP11.11□□□□□ -0.63
CLIP3-201ENST00000360535 RBP7Q96R05 134 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 GFI1Q99684 422 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 SARGQ9BW04 601 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 TRIM2Q9C040 744 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 SCP2D1Q9UJQ7 156 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 V9GY05 133 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 RTTNQ86VV8 2226 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 C2orf16Q68DN1 1984 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 DOCK8Q8NF50 2099 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 IFITM5A6NNB3 132 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 NUPL2O15504 423 aaKnown RBP11.11□□□□□ -0.63
CLIP3-201ENST00000360535 PLRG1O43660 514 aaKnown RBP11.11□□□□□ -0.63
CLIP3-201ENST00000360535 POU3F2P20265 443 aaPredicted RBP11.11□□□□□ -0.63
CLIP3-201ENST00000360535 ARFIP1P53367 373 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 KIR2DS3Q14952 304 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 ITPRIPL2Q3MIP1 535 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 OR5M10Q6IEU7 315 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 ALKAL2Q6UX46 152 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 JAZF1Q86VZ6 243 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 CA13Q8N1Q1 262 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 SORCS2Q96PQ0 1159 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 ALG12Q9BV10 488 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 TMEM138Q9NPI0 162 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 COPZ2Q9P299 210 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 KLHL9Q9P2J3 617 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 CHRNA9Q9UGM1 479 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 PCDHGA9Q9Y5G4 932 aaKnown RBP11.11□□□□□ -0.63
CLIP3-201ENST00000360535 TICRRQ7Z2Z1 1910 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 K7EQS6 105 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 L7N2F9 121 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ARPC5O15511 151 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 HLA-DQA2P01906 255 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 MAOAP21397 527 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 RPS4Y1P22090 263 aaKnown RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 POU4F2Q12837 409 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 COL28A1Q2UY09 1125 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ULK3Q6PHR2 472 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 BPHLQ86WA6 291 aaPredicted RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 OR6N2Q8NGY6 317 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 OR10AC1Q8NH08 325 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ZDHHC1Q8WTX9 485 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ANKRD9Q96BM1 317 aaPredicted RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 SLC25A38Q96DW6 304 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 BMFQ96LC9 184 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 NTMQ9P121 344 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ERVK-19Q9WJR5 959 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 FXYD6-FXYD2A0A087WZ82 144 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 TRAV1-2A0A0B4J238 106 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 OGG1O15527 345 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 SMIM10L1P0DMW3 83 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ATF4P18848 351 aaPredicted RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 CDKN2AP42771 156 aaKnown RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 MGAT2Q10469 447 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 OPCMLQ14982 345 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ZMYND11Q15326 602 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 FAM199XQ6PEV8 388 aaPredicted RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 SPERTQ8NA61 448 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 AVL9Q8NBF6 648 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 TM4SF19Q96DZ7 209 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 SMIM10Q96HG1 83 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 SFXN2Q96NB2 322 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 MYADMQ96S97 322 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 DHRS9Q9BPW9 319 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 FXYD6Q9H0Q3 95 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 C14orf105Q9NVL8 296 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 OR5V1Q9UGF6 321 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 MAB21L2Q9Y586 359 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ENTPD2Q9Y5L3 495 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ELOA3DA6NLF2 546 aaPredicted RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ANXA2P2A6NMY6 339 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 C11orf98E9PRG8 122 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ANXA2P07355 339 aaKnown RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 MAOBP27338 520 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ITPKBP27987 946 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 NTSR1P30989 418 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 KIAA1024LP59773 190 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 CTXN1P60606 82 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ILF3Q12906 894 aaKnown RBP eCLIP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 FHL1Q13642 323 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ELOA3BQ3SY89 546 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 LIPNQ5VXI9 398 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 C11orf88Q6PI97 169 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 TAF8Q7Z7C8 310 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 PRR22Q8IZ63 422 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ZNF676Q8N7Q3 588 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 GALNT11Q8NCW6 608 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 NPEPL1Q8NDH3 523 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 ELOA3Q8NG57 546 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 FLVCR1-AS1Q8TAF5 88 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 PHOSPHO1Q8TCT1 267 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 RSC1A1Q92681 617 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 DVL3Q92997 716 aaPredicted RBP11.1□□□□□ -0.63
CLIP3-201ENST00000360535 OR1F2PQ96R84 312 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 STACQ99469 402 aa11.1□□□□□ -0.63
CLIP3-201ENST00000360535 RXFP3Q9NSD7 469 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms