RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ZIK1Q3SY52 487 aaPredicted RBP3.59□□□□□ -1.84
LIG4-201ENST00000356922 ACSF3Q4G176 576 aaPredicted RBP3.59□□□□□ -1.84
LIG4-201ENST00000356922 CLEC12AQ5QGZ9 265 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 PHYHD1Q5SRE7 291 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 AAGABQ6PD74 315 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 TMPRSS11FQ6ZWK6 438 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 NUFIP2Q7Z417 695 aaKnown RBP3.59□□□□□ -1.84
LIG4-201ENST00000356922 P4HA3Q7Z4N8 544 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 BCDIN3DQ7Z5W3 292 aaKnown RBP3.59□□□□□ -1.84
LIG4-201ENST00000356922 TUSC5Q8IXB3 177 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 IQCF1Q8N6M8 205 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 LRRC75AQ8NAA5 344 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 OR2V1Q8NHB1 315 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 PRR7Q8TB68 274 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 CENPNQ96H22 339 aaPredicted RBP3.59□□□□□ -1.84
LIG4-201ENST00000356922 TRIB1Q96RU8 372 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 TMEM43Q9BTV4 400 aa3.59□□□□□ -1.84
LIG4-201ENST00000356922 PKDREJQ9NTG1 2253 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 G3V2T6 193 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 PLPP3O14495 311 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 OR6A2O95222 327 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ATP6V1G2O95670 118 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 SNAP29O95721 258 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ALPLP05186 524 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ZNF23P17027 643 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ITGA2P17301 1181 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 DNAJA1P31689 397 aaKnown RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 UQCRC1P31930 480 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 GSSP48637 474 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 SLC9A3P48764 834 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 CTBP2P56545 445 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 NUP107P57740 925 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 OR2B6P58173 313 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 RAC3P60763 192 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 RPS4XP62701 263 aaKnown RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 RPL18Q07020 188 aaKnown RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 SNTB1Q13884 538 aaKnown RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 SLC17A1Q14916 467 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ZSWIM7Q19AV6 140 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 KRTCAP3Q53RY4 240 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 FAM69AQ5T7M9 428 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ALKBH2Q6NS38 261 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ACSM5Q6NUN0 579 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 FAHD1Q6P587 224 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 VWA1Q6PCB0 445 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 TTC33Q6PID6 262 aaPredicted RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 ESPNLQ6ZVH7 1005 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 LINGO2Q7L985 606 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 GPAT4Q86UL3 456 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 CDK20Q8IZL9 346 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 GALNT4Q8N4A0 578 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 OR10G2Q8NGC3 310 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 FAM57AQ8TBR7 257 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 INTS12Q96CB8 462 aaKnown RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 MPP4Q96JB8 637 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ZNF347Q96SE7 839 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 PSD2Q9BQI7 771 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 TTYH2Q9BSA4 534 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 REEP1Q9H902 201 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 NANSQ9NR45 359 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 STX18Q9P2W9 335 aaKnown RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 CLCF1Q9UBD9 225 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 TMCC3Q9ULS5 477 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 AP4B1Q9Y6B7 739 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 TEX15Q9BXT5 2789 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ZANQ9Y493 2812 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 TRAV36DV7A0A075B6V5 113 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 A0A0G2JNJ9 132 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 DCTN6O00399 190 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 LRRTM2O43300 516 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 TNFSF13O75888 250 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ACTL6AO96019 429 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 GLI4P10075 376 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 EDN3P14138 238 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 AHCYP23526 432 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ELK4P28324 431 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 KIR2DL2P43627 348 aaPredicted RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 GK3PQ14409 553 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 MELKQ14680 651 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 INAQ16352 499 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 SLC36A3Q495N2 470 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 KDM4DQ6B0I6 523 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 SHQ1Q6PI26 577 aaKnown RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 FJX1Q86VR8 437 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ATCAYQ86WG3 371 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 OR4Q3Q8NH05 313 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 MAGEE2Q8TD90 523 aaPredicted RBP3.58□□□□□ -1.84
LIG4-201ENST00000356922 STK35Q8TDR2 534 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 SAMD8Q96LT4 415 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 EPYCQ99645 322 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 TAPBPLQ9BX59 468 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 OSBPL10Q9BXB5 764 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 HCAR1Q9BXC0 346 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 POTEKPQ9BYX7 375 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 UCK2Q9BZX2 261 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 RNF122Q9H9V4 155 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 RNPEPL1Q9HAU8 725 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 C12orf10Q9HB07 376 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 Q9UFV3 132 aa3.58□□□□□ -1.84
LIG4-201ENST00000356922 ERRFI1Q9UJM3 462 aaPredicted RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms