RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 PRSS57Q6UWY2 283 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 YTHDF3Q7Z739 585 aaKnown RBP16.12■□□□□ 0.17
CLN3-202ENST00000355477 PATL1Q86TB9 770 aaKnown RBP16.12■□□□□ 0.17
CLN3-202ENST00000355477 RANBP3LQ86VV4 465 aaPredicted RBP16.12■□□□□ 0.17
CLN3-202ENST00000355477 SNX32Q86XE0 403 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 CALHM3Q86XJ0 350 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 OR6T1Q8NGN1 323 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 ZNF417Q8TAU3 575 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 SMAP2Q8WU79 429 aaPredicted RBP16.12■□□□□ 0.17
CLN3-202ENST00000355477 OXGR1Q96P68 337 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 ZNF587Q96SQ5 575 aaPredicted RBP16.12■□□□□ 0.17
CLN3-202ENST00000355477 SMR3AQ99954 134 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 EVA1AQ9H8M9 152 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 SLC17A5Q9NRA2 495 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 CISD1Q9NZ45 108 aaKnown RBP16.12■□□□□ 0.17
CLN3-202ENST00000355477 SELENONQ9NZV5 590 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 USP22Q9UPT9 525 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 MRASO14807 208 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 AIM2O14862 343 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 UPK3AO75631 287 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 CD40P25942 277 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 MDH1P40925 334 aaKnown RBP16.11■□□□□ 0.17
CLN3-202ENST00000355477 TGFBR3Q03167 851 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 SPOCK1Q08629 439 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 HIKESHIQ53FT3 197 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 COQ5Q5HYK3 327 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 LINC00114Q6XXX2 140 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 CCDC80Q76M96 950 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 TSPYL5Q86VY4 417 aaPredicted RBP16.11■□□□□ 0.17
CLN3-202ENST00000355477 SLC30A8Q8IWU4 369 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 C1orf162Q8NEQ5 155 aaPredicted RBP16.11■□□□□ 0.17
CLN3-202ENST00000355477 C10orf82Q8WW14 230 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 Q96MF0 132 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 ZNF317Q96PQ6 595 aaPredicted RBP16.11■□□□□ 0.17
CLN3-202ENST00000355477 CXorf56Q9H5V9 222 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 MED4Q9NPJ6 270 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 MRGBPQ9NV56 204 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 B3GALT5Q9Y2C3 310 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 CSPG4Q6UVK1 2322 aa16.11■□□□□ 0.17
CLN3-202ENST00000355477 CPSF4LA6NMK7 179 aaKnown RBP16.1■□□□□ 0.17
CLN3-202ENST00000355477 LRRN3E7EW58 273 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 MS4A18H0YCH9 400 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 M0R1B8 84 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 OVOL3O00110 214 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 FMO6PO60774 539 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 KRT33AO76009 404 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 ZNF432O94892 652 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 LYPD3O95274 346 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 HPRP00739 348 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 NPPAP01160 153 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 CD8AP01732 235 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 BGLAPP02818 100 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 THY1P04216 161 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 ZNF43P17038 809 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 RIPPLY3P57055 190 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 MS4A18Q3C1V0 323 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 ENTPD8Q5MY95 495 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 TMEM108Q6UXF1 575 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 WDR88Q6ZMY6 472 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 H1FNTQ75WM6 255 aaPredicted RBP16.1■□□□□ 0.17
CLN3-202ENST00000355477 PIAS4Q8N2W9 510 aaPredicted RBP16.1■□□□□ 0.17
CLN3-202ENST00000355477 CIARTQ8N365 385 aaPredicted RBP16.1■□□□□ 0.17
CLN3-202ENST00000355477 C17orf78Q8N4C9 275 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 OR8J3Q8NGG0 315 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 VANGL1Q8TAA9 524 aaPredicted RBP16.1■□□□□ 0.17
CLN3-202ENST00000355477 C18orf12Q96KH6 178 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 ZNF583Q96ND8 569 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 MOGAT1Q96PD6 335 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 ECSITQ9BQ95 431 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 ARMCX1Q9P291 453 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 MAGED1Q9Y5V3 778 aaPredicted RBP16.1■□□□□ 0.17
CLN3-202ENST00000355477 NAV3Q8IVL0 2385 aa16.1■□□□□ 0.17
CLN3-202ENST00000355477 LOC102725191A0A1B0GVB3 256 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 BBIP1A8MTZ0 92 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 TMCC2O75069 709 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 PTAFRP25105 342 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 CDH11P55287 796 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 RPS4XP62701 263 aaKnown RBP16.09■□□□□ 0.17
CLN3-202ENST00000355477 MAPRE2Q15555 327 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 SWT1Q5T5J6 900 aaKnown RBP16.09■□□□□ 0.17
CLN3-202ENST00000355477 INTS11Q5TA45 600 aaKnown RBP16.09■□□□□ 0.17
CLN3-202ENST00000355477 ZNF613Q6PF04 617 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 KLHL17Q6TDP4 642 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 ABHD12BQ7Z5M8 362 aaPredicted RBP16.09■□□□□ 0.17
CLN3-202ENST00000355477 OR6S1Q8NH40 331 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 SLC26A7Q8TE54 656 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 SLC41A3Q96GZ6 507 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 BOD1Q96IK1 185 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 ALKBH3Q96Q83 286 aaPredicted RBP16.09■□□□□ 0.17
CLN3-202ENST00000355477 SH3GL1Q99961 368 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 TMEM43Q9BTV4 400 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 AMDHD2Q9Y303 409 aa16.09■□□□□ 0.17
CLN3-202ENST00000355477 TRIM64A6NGJ6 449 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 TRIM64BA6NI03 449 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 E7EQL1 145 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 ZNF587BE7ETH6 402 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 TRAF3IP2O43734 574 aaPredicted RBP16.08■□□□□ 0.16
CLN3-202ENST00000355477 INHBBP09529 407 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 HLA-DOBP13765 273 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 CDKN1AP38936 164 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms