RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PACRGLQ8N7B6 248 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 LSMEM1Q8N8F7 131 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 ZBTB8BQ8NAP8 495 aaPredicted RBP8.27□□□□□ -1.08
USP4-202ENST00000351842 SDR9C7Q8NEX9 313 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 TEX47Q8TBZ9 253 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 DDIT4LQ96D03 193 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 PLEKHA8Q96JA3 519 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 ERMAPQ96PL5 475 aaPredicted RBP8.27□□□□□ -1.08
USP4-202ENST00000351842 RBM4BQ9BQ04 359 aaKnown RBP8.27□□□□□ -1.08
USP4-202ENST00000351842 KATNB1Q9BVA0 655 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 RBM4Q9BWF3 364 aaKnown RBP8.27□□□□□ -1.08
USP4-202ENST00000351842 OR52D1Q9H346 318 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 SMPD3Q9NY59 655 aaPredicted RBP8.27□□□□□ -1.08
USP4-202ENST00000351842 DKK4Q9UBT3 224 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 FLNBO75369 2602 aaKnown RBP8.27□□□□□ -1.09
USP4-202ENST00000351842 ALPLP05186 524 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 ENDOUP21128 410 aaKnown RBP8.27□□□□□ -1.09
USP4-202ENST00000351842 IDUAP35475 653 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 CTXN1P60606 82 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 CAMK2DQ13557 499 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 GINS1Q14691 196 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 ZNF605Q86T29 641 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 FADS6Q8N9I5 356 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 ZFP62Q8NB50 900 aaPredicted RBP8.27□□□□□ -1.09
USP4-202ENST00000351842 OR4C15Q8NGM1 316 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 ST8SIA1Q92185 356 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 TMEM41AQ96HV5 264 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 MRGPRX4Q96LA9 322 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 EPYCQ99645 322 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 SRXN1Q9BYN0 137 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 UBQLN3Q9H347 655 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 PNPLA3Q9NST1 481 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 PCDHGB7Q9Y5F8 929 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 PCDHGA9Q9Y5G4 932 aaKnown RBP8.27□□□□□ -1.09
USP4-202ENST00000351842 GMPPBQ9Y5P6 360 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 IER3IP1Q9Y5U9 82 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 POLQO75417 2590 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 UNC119BA6NIH7 251 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 ARHGEF9O43307 516 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 CHMP24386 653 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 MSX1P28360 303 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 IFNGR2P38484 337 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 ADH7P40394 386 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 ALDH3A2P51648 485 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 RAD23AP54725 363 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 RPL18Q07020 188 aaKnown RBP8.27□□□□□ -1.09
USP4-202ENST00000351842 IGFBP7Q16270 282 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 SNAPC1Q16533 368 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 KRT80Q6KB66 452 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 Q6ZS92 163 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 SHFQ7M4L6 423 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 CPAMD8Q8IZJ3 1885 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 DHRSXQ8N5I4 330 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 TCEANCQ8N8B7 351 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 Q8NA96 180 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 OR8D4Q8NGM9 314 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 CNIH3Q8TBE1 160 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 TXNDC15Q96J42 360 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 Q96M85 177 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 KLHL15Q96M94 604 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 SECISBP2Q96T21 854 aaKnown RBP8.27□□□□□ -1.09
USP4-202ENST00000351842 POLDIP3Q9BY77 421 aaKnown RBP8.27□□□□□ -1.09
USP4-202ENST00000351842 DNAJC27Q9NZQ0 273 aa8.27□□□□□ -1.09
USP4-202ENST00000351842 PTGES3LE9PB15 166 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 TLX2O43763 284 aaPredicted RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 CEACAM4O75871 244 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 AQP8O94778 261 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 GPANK1O95872 356 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 CLUP10909 449 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 APOBEC1P41238 236 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 RPS27P42677 84 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 OMPP47874 163 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 TUBA4AP68366 448 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 PTGES3Q15185 160 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 SMN1Q16637 294 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 EIF2S3LQ2VIR3 472 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 ALG10Q5BKT4 473 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 FAM69AQ5T7M9 428 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 CD163Q86VB7 1156 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 SATL1Q86VE3 508 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 KIF18BQ86Y91 864 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 ZNF555Q8NEP9 628 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 OR52L1Q8NGH7 329 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 NSMAFQ92636 917 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 INTS12Q96CB8 462 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 MPP4Q96JB8 637 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 MUS81Q96NY9 551 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 ADI1Q9BV57 179 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 OSBPL10Q9BXB5 764 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 ANKRD60Q9BZ19 345 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 SRA1Q9HD15 236 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 EXOSC3Q9NQT5 275 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 C8orf4Q9NR00 106 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 TMEFF2Q9UIK5 374 aaPredicted RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 ABCA12Q86UK0 2595 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 PLCE1Q9P212 2302 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 TRGV8A0A0C4DH27 118 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 EIF1P41567 113 aaKnown RBP8.26□□□□□ -1.09
USP4-202ENST00000351842 SELENBP1Q13228 472 aa8.26□□□□□ -1.09
USP4-202ENST00000351842 MRPL49Q13405 166 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms