RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LILRB5O75023 590 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 RAE1P78406 368 aaKnown RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 CBLBQ13191 982 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ARL6IP1Q15041 203 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 GAB4Q2WGN9 574 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 OLFML2AQ68BL7 652 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 LRRC17Q8N6Y2 441 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 OR5D14Q8NGL3 314 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 GPR148Q8TDV2 347 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 CA5BP1Q8WTZ4 195 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 LRFN3Q9BTN0 628 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 MMP25Q9NPA2 562 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ZFP64Q9NPA5 681 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ACER3Q9NUN7 267 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 NDRG4Q9ULP0 352 aaKnown RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 TRABD2BA6NFA1 517 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ZNF593O00488 134 aaPredicted RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 HYAL3O43820 417 aaPredicted RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 STARP49675 285 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 EMDP50402 254 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 SNU13P55769 128 aaKnown RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 EMC4Q5J8M3 183 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 SLC35D3Q5M8T2 416 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 LIPKQ5VXJ0 399 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 WFDC8Q8IUA0 241 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 SCARF2Q96GP6 870 aaPredicted RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 TIMD4Q96H15 378 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 RLIMQ9NVW2 624 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 STUB1Q9UNE7 303 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 CMAHPQ9Y471 501 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 METTL15A6NJ78 407 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 HTR3BO95264 441 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 CD14P08571 375 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 TP53I3Q53FA7 332 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 THOC7Q6I9Y2 204 aaKnown RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 ARMC10Q8N2F6 343 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 OR5T2Q8NGG2 359 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 OR6T1Q8NGN1 323 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ZNF501Q96CX3 271 aaPredicted RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 HAVCR1Q96D42 359 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 TEX37Q96LM6 180 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 NIPAL2Q9H841 368 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 FAM172BPA6NC97 362 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 NKX6-3A6NJ46 265 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 M0R1B8 84 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ABHD16AO95870 558 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 DCTN2Q13561 401 aaKnown RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 SPHARQ15513 63 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ZNF322Q6U7Q0 402 aaPredicted RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 NEIL3Q8TAT5 605 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 AMBRA1Q9C0C7 1298 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 EGLN3Q9H6Z9 239 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ZNF222Q9UK12 451 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 KCNS2Q9ULS6 477 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 SPATA2Q9UM82 520 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 AGAP5A6NIR3 686 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 HNRNPFP52597 415 aaKnown RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 FOXF1Q12946 379 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PROX2Q3B8N5 592 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 DCAF10Q5QP82 559 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 ZNF684Q5T5D7 378 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PLAG1Q6DJT9 500 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 GJC3Q8NFK1 279 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 OR5M9Q8NGP3 310 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PAPOLGQ9BWT3 736 aaKnown RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 ACOT13Q9NPJ3 140 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 SIDT1Q9NXL6 827 aaKnown RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 LUZP4Q9P127 313 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 B3GAT1Q9P2W7 334 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 ERVK-18Q9QC07 812 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 A0A1W2PPV9 198 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 SLC35F4A4IF30 521 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 CLCA1A8K7I4 914 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 M0R082 166 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 STSP08842 583 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 CDC20Q12834 499 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 KCTD21Q4G0X4 260 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PRSS41Q7RTY9 318 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PTRH1Q86Y79 214 aaKnown RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 OR10G3Q8NGC4 313 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 ZNF417Q8TAU3 575 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 TRMT10AQ8TBZ6 339 aaKnown RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 FOXRED1Q96CU9 486 aaPredicted RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 ZNF587Q96SQ5 575 aaPredicted RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 WDR76Q9H967 626 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 MOV10Q9HCE1 1003 aaKnown RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 TMEM269A0A1B0GVZ9 245 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PIP5K1CO60331 668 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PEX14O75381 377 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 GASTP01350 101 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 MAS1P04201 325 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 UCHL1P09936 223 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 IFNGR1P15260 489 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 BLMHQ13867 455 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PRTGQ2VWP7 1150 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 DLEU7Q6UYE1 221 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 KISS1RQ969F8 398 aaPredicted RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 DCSTAMPQ9H295 470 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 FAM240BA0A1B0GVZ2 78 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 NKX2-2O95096 273 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms