RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 NAT8BQ9UHF3 227 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 USP3Q9Y6I4 520 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 TRAV41A0A0B4J266 112 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 USP17L5A8MUK1 530 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF814B7Z6K7 855 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 VIPP01282 170 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 GP1BBP13224 206 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF157P51786 506 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 KIAA1024LP59773 190 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ITPRIPL2Q3MIP1 535 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 MED27Q6P2C8 311 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 KCTD18Q6PI47 426 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 BLOC1S3Q6QNY0 202 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 Q6ZTK2 550 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 CMC1Q7Z7K0 106 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 CATSPERDQ86XM0 798 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 PHYKPLQ8IUZ5 450 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC35G3Q8N808 338 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF384Q8TF68 577 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ADAT3Q96EY9 351 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 DERL1Q9BUN8 251 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 RSPO3Q9BXY4 272 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 IL21Q9HBE4 155 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 NOX3Q9HBY0 568 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 PAM16Q9Y3D7 125 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 HMX2A2RU54 273 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 SOCS2O14508 198 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 SYT7O43581 403 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 PRKNO60260 465 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ALOX12BO75342 701 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 CD99P14209 185 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 DTYMKP23919 212 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ITGB7P26010 798 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 PSMB4P28070 264 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 GABRA5P31644 462 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 METAP1P53582 386 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 TPBGQ13641 420 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 TIGITQ495A1 244 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 MFSD5Q6N075 450 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF600Q6ZNG1 722 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 MRPL55Q7Z7F7 128 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 CPNE9Q8IYJ1 553 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 TEX29Q8N6K0 151 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 SCARB1Q8WTV0 552 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC35B4Q969S0 331 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ROPN1LQ96C74 230 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 NKX3-1Q99801 234 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 LRFN3Q9BTN0 628 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 HEYLQ9NQ87 328 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 MBD1Q9UIS9 605 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 A0A1B0GV90 55 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 MYMKA6NI61 221 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ADAP1O75689 374 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 TRGC2P03986 189 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 GSTP1P09211 210 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 PRSS56P0CW18 603 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 HTR1EP28566 365 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 PNLIPRP1P54315 467 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 HIST1H4AP62805 103 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 BAK1Q16611 211 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 KHDC1Q4VXA5 237 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ELFN2Q5R3F8 820 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ENDOVQ8N8Q3 282 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 OR5D16Q8NGK9 328 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 OR4C16Q8NGL9 310 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 PHYHIPQ92561 330 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 PINX1Q96BK5 328 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC2A13Q96QE2 648 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC46A2Q9BY10 475 aa7.14□□□□□ -1.27
LIMCH1-201ENST00000313860 ASXL2Q76L83 1435 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC22A23A1A5C7 686 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 NRP1O14786 923 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 HOXC11O43248 304 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 TREHO43280 583 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 AP1G1O43747 822 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 VNN1O95497 513 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 SPATA31C1P0DKV0 1188 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 HOXB6P17509 224 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 SRMP19623 302 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 TOB1P50616 345 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 CCR6P51684 374 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 RABL3Q5HYI8 236 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 PRAMEF18Q5VWM3 479 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 LEG1Q6P5S2 330 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 LRRC55Q6ZSA7 311 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 KIAA0907Q7Z7F0 614 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 OR2K2Q8NGT1 345 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 CNIH3Q8TBE1 160 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 KCTD13Q8WZ19 329 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 PGLYRP2Q96PD5 576 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 DGAT2Q96PD7 388 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 CYP2S1Q96SQ9 504 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 TM6SF2Q9BZW4 377 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 GREM2Q9H772 168 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 THSD1Q9NS62 852 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 SEMA4GQ9NTN9 838 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 EHFQ9NZC4 300 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 OAZ3Q9UMX2 235 aa7.13□□□□□ -1.27
LIMCH1-201ENST00000313860 LHX6Q9UPM6 363 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms