RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TMCO2Q7Z6W1 182 aaPredicted RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 ZSCAN1Q8NBB4 408 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 TCEAL3Q969E4 200 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 PDCD10Q9BUL8 212 aa12.37□□□□□ -0.43
SKA3-201ENST00000298260 PRMT8Q9NR22 394 aaPredicted RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 ZNF275Q9NSD4 429 aaPredicted RBP12.37□□□□□ -0.43
SKA3-201ENST00000298260 SPEGQ15772 3267 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 CACNB4O00305 520 aaPredicted RBP12.36□□□□□ -0.43
SKA3-201ENST00000298260 RNF224P0DH78 156 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 ADH6P28332 368 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 ATP1B3P54709 279 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 DHRS7BQ6IAN0 325 aaPredicted RBP12.36□□□□□ -0.43
SKA3-201ENST00000298260 BAIAP2L2Q6UXY1 529 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 BIVMQ86UB2 503 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 TMPRSS12Q86WS5 348 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 NUDT13Q86X67 352 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 STEAP2Q8NFT2 490 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 OR52E2Q8NGJ4 325 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 OR10R2Q8NGX6 335 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 NUBPLQ8TB37 319 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 CYB5D2Q8WUJ1 264 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 CDS1Q92903 461 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 ZMAT3Q9HA38 289 aaKnown RBP12.36□□□□□ -0.43
SKA3-201ENST00000298260 ZNF334Q9HCZ1 680 aaPredicted RBP12.36□□□□□ -0.43
SKA3-201ENST00000298260 CMC2Q9NRP2 79 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 FBXO34Q9NWN3 711 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 PLEKHA6Q9Y2H5 1048 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 RPH3AQ9Y2J0 694 aaPredicted RBP12.36□□□□□ -0.43
SKA3-201ENST00000298260 Q9Y3F1 56 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 NUP210Q8TEM1 1887 aaPredicted RBP12.36□□□□□ -0.43
SKA3-201ENST00000298260 RNF222A6NCQ9 220 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 FAM86C2PA6NEL3 165 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 ACOT7O00154 380 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 ZFPL1O95159 310 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 TAS2R43P59537 309 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 HTRA4P83105 476 aaPredicted RBP12.36□□□□□ -0.43
SKA3-201ENST00000298260 TRAM1Q15629 374 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 CCDC157Q569K6 752 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 GDPD4Q6W3E5 623 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 SLC29A4Q7RTT9 530 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 NAA40Q86UY6 237 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 C17orf64Q86WR6 236 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 LNX2Q8N448 690 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 CAMKVQ8NCB2 501 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 OR4A4PQ8NGN8 299 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 SLC35A4Q96G79 324 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 TNFRSF13CQ96RJ3 184 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 PIGMQ9H3S5 423 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 CACYBPQ9HB71 228 aaKnown RBP12.36□□□□□ -0.43
SKA3-201ENST00000298260 ZFP57Q9NU63 452 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 V9GY05 133 aa12.36□□□□□ -0.43
SKA3-201ENST00000298260 A0A1W2PR48 441 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 AGPAT2O15120 278 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 RBBP9O75884 186 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 S100A9P06702 114 aaKnown RBP12.35□□□□□ -0.43
SKA3-201ENST00000298260 ST8SIA6P61647 398 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 SCN5AQ14524 2016 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 AMZ1Q400G9 498 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 ZNF836Q6ZNA1 936 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 NUDT18Q6ZVK8 323 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 OVCH1Q7RTY7 1134 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 TEX19Q8NA77 164 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 NUP43Q8NFH3 380 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 OR1J2Q8NGS2 313 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 ZPLD1Q8TCW7 415 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 RELTQ969Z4 430 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 TRIM43Q96BQ3 446 aaPredicted RBP12.35□□□□□ -0.43
SKA3-201ENST00000298260 ZNF251Q9BRH9 671 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 NAA11Q9BSU3 229 aaPredicted RBP12.35□□□□□ -0.43
SKA3-201ENST00000298260 TM7SF3Q9NS93 570 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 RIIAD1A6NNX1 92 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 FOSL1P15407 271 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 SLC2A5P22732 501 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 DLSTP36957 453 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 CAPZA1P52907 286 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 SNRPNP63162 240 aaKnown RBP12.35□□□□□ -0.43
SKA3-201ENST00000298260 ZNF547Q8IVP9 402 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 KLHDC8AQ8IYD2 350 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 VN1R2Q8NFZ6 395 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 OR2A12Q8NGT7 310 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 OR6K6Q8NGW6 343 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 OR4C6Q8NH72 309 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 INTS12Q96CB8 462 aaKnown RBP12.35□□□□□ -0.43
SKA3-201ENST00000298260 ZNF689Q96CS4 500 aaPredicted RBP12.35□□□□□ -0.43
SKA3-201ENST00000298260 HAVCR1Q96D42 359 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 KLHL28Q9NXS3 571 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 PPIL1Q9Y3C6 166 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 ADAM18Q9Y3Q7 739 aa12.35□□□□□ -0.43
SKA3-201ENST00000298260 OGG1O15527 345 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 POP4O95707 220 aaKnown RBP12.34□□□□□ -0.43
SKA3-201ENST00000298260 NTSP30990 170 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 RPS27P42677 84 aaKnown RBP12.34□□□□□ -0.43
SKA3-201ENST00000298260 ZNF136P52737 540 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 DCDP81605 110 aaKnown RBP12.34□□□□□ -0.43
SKA3-201ENST00000298260 FABP9Q0Z7S8 132 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 FAM111BQ6SJ93 734 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 USP53Q70EK8 1073 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 OR4N5Q8IXE1 308 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 ZNF614Q8N883 585 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 OR10AC1Q8NH08 325 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms