RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 SPATC1Q76KD6 591 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 OR5A2Q8NGI9 324 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 CNIH3Q8TBE1 160 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 KIRREL1Q96J84 757 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ADGRG7Q96K78 797 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 PRRC1Q96M27 445 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 RIMS4Q9H426 269 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 RHOFQ9HBH0 211 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 NAT8BQ9UHF3 227 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 RAB22AQ9UL26 194 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 TOPAZ1Q8N9V7 1692 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ARNTLO00327 626 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 CD8BP10966 210 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ST6GAL1P15907 406 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 NFATC2Q13469 925 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 LGALSLQ3ZCW2 172 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 BCL7AQ4VC05 210 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 KCTD11Q693B1 232 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SLC8B1Q6J4K2 584 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 RPUSD3Q6P087 351 aaKnown RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 TOMM20LQ6UXN7 152 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ADGRE4PQ86SQ3 457 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 NAGSQ8N159 534 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 RCBTB1Q8NDN9 531 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ACSF2Q96CM8 615 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 TPPP3Q9BW30 176 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 MTHFD2LQ9H903 347 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 PXMP2Q9NR77 195 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ING1Q9UK53 422 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 A6NLC8 198 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 B4DXG7 233 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 EFNA3P52797 238 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 AAK1Q2M2I8 961 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 NOL9Q5SY16 702 aaKnown RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 FAM151BQ6UXP7 276 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 UBE3DQ7Z6J8 389 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 BAP18Q8IXM2 172 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 CERS5Q8N5B7 392 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SYNPRQ8TBG9 265 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 TRMT61BQ9BVS5 477 aaKnown RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 TXLNGYQ9BZA5 131 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 PARD6AQ9NPB6 346 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SLC23A1Q9UHI7 598 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 COL5A2P05997 1499 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 CLDN34H7C241 214 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SULT2B1O00204 365 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 HAS3O00219 553 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ACTL6AO96019 429 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 UNGP13051 313 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SSTR3P32745 418 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ZNF345Q14585 488 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 AANATQ16613 207 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SLC36A2Q495M3 483 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 TMEM236Q5W0B7 351 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SERINC5Q86VE9 423 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 OR6M1Q8NGM8 313 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 MRPS16Q9Y3D3 137 aaKnown RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 KDM4FA0A1W2PPD8 638 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 BCL2L11O43521 198 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 VEGFDO43915 354 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 NDUFB2O95178 105 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 MT-ND6P03923 174 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 NT5EP21589 574 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ARR3P36575 388 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 MGAT3Q09327 533 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SOWAHCQ53LP3 525 aaPredicted RBP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ALKAL2Q6UX46 152 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ASPGQ86U10 573 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.53□□□□□ -1.68
CSMD3-201ENST00000297405 ZMIZ2Q8NF64 920 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SLC35B4Q969S0 331 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 BEX1Q9HBH7 125 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 FBXO4Q9UKT5 387 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 GAB2Q9UQC2 676 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 NTSR2O95665 410 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 NAGAP17050 411 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 AMTP48728 403 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 PAFAH1B2P68402 229 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 GALNT10Q86SR1 603 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 SLAIN1Q8ND83 568 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 MS4A10Q96PG2 267 aa4.53□□□□□ -1.68
CSMD3-201ENST00000297405 DUXBA0A1W2PPF3 345 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TIA1P31483 386 aaKnown RBP eCLIP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CLRN1P58418 232 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 MC1RQ01726 317 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 GANABQ14697 944 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 PODNL1Q6PEZ8 512 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR6K2Q8NGY2 324 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TRIB1Q96RU8 372 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 UTP23Q9BRU9 249 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 MARVELD1Q9BSK0 173 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 THSD1Q9NS62 852 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 IL37Q9NZH6 218 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 BTNL2Q9UIR0 455 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF727A8MUV8 499 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 KLF8O95600 359 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 MRPS6P82932 125 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ARL16Q0P5N6 197 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ELOCQ15369 112 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TAC4Q86UU9 113 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms