RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 RNF13O43567 381 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 CHP2O43745 196 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 KLF7O75840 302 aaPredicted RBP15.3■□□□□ 0.04
CPSF4-201ENST00000292476 SLC2A10O95528 541 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 UBL4AP11441 157 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 PRG2P13727 222 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 MAKP20794 623 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 F8A1P23610 371 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 SLC6A8P48029 635 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 EVX1P49640 407 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 POU4F2Q12837 409 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 CAMK2BQ13554 666 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 CARTPTQ16568 116 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 PLBD1Q6P4A8 553 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 ULK3Q6PHR2 472 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 WDR88Q6ZMY6 472 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 MISPQ8IVT2 679 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 BPIFA2Q96DR5 249 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 NEDD4LQ96PU5 975 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 UBL7Q96S82 380 aaPredicted RBP15.3■□□□□ 0.04
CPSF4-201ENST00000292476 TMED9Q9BVK6 235 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 ZNF700Q9H0M5 742 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 AKIRIN1Q9H9L7 192 aaPredicted RBP15.3■□□□□ 0.04
CPSF4-201ENST00000292476 HAO2Q9NYQ3 351 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 SIGLEC7Q9Y286 467 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 NPFFR2Q9Y5X5 522 aa15.3■□□□□ 0.04
CPSF4-201ENST00000292476 TPRP12270 2363 aaKnown RBP15.3■□□□□ 0.04
CPSF4-201ENST00000292476 MEIOCA2RUB1 952 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 TRABD2BA6NFA1 517 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 C12orf71A8MTZ7 269 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 ZNF264O43296 627 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 EIF4E2O60573 245 aaKnown RBP15.29■□□□□ 0.04
CPSF4-201ENST00000292476 TRIM3O75382 744 aaPredicted RBP15.29■□□□□ 0.04
CPSF4-201ENST00000292476 ACAA2P42765 397 aaKnown RBP15.29■□□□□ 0.04
CPSF4-201ENST00000292476 RPS15P62841 145 aaKnown RBP15.29■□□□□ 0.04
CPSF4-201ENST00000292476 ATAD3CQ5T2N8 411 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 MZT2BQ6NZ67 158 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 CNIH2Q6PI25 160 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 KLBQ86Z14 1044 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 ZFP41Q8N8Y5 198 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 FAM71CQ8NEG0 241 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 M1APQ8TC57 530 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 SLC22A8Q8TCC7 542 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 KISS1RQ969F8 398 aaPredicted RBP15.29■□□□□ 0.04
CPSF4-201ENST00000292476 PMEPA1Q969W9 287 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 OTULINQ96BN8 352 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 ZNF426Q9BUY5 554 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 ALG8Q9BVK2 526 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 TBL1XR1Q9BZK7 514 aa15.29■□□□□ 0.04
CPSF4-201ENST00000292476 C11orf54Q9H0W9 315 aaPredicted RBP15.29■□□□□ 0.04
CPSF4-201ENST00000292476 A0A0B4J2E0 115 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 A0A1B0GX12 115 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 RIIAD1A6NNX1 92 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 ALG1L2C9J202 215 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 PRR23D1E9PI22 279 aaPredicted RBP15.28■□□□□ 0.04
CPSF4-201ENST00000292476 PPM1BO75688 479 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 MT-ND5P03915 603 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 PRR23D2P0DMB1 279 aaPredicted RBP15.28■□□□□ 0.04
CPSF4-201ENST00000292476 ICAM2P13598 275 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 ACTC1P68032 377 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 ACTA1P68133 377 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 FNDC7Q5VTL7 733 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 TRIQKQ629K1 86 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 TMEM91Q6ZNR0 172 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 OR51G2Q8NGK0 314 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 PFN4Q8NHR9 129 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 PHOSPHO1Q8TCT1 267 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 DEFB126Q9BYW3 111 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 NRSN2Q9GZP1 204 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 LAT2Q9GZY6 243 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 RERGLQ9H628 205 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 ACACBO00763 2458 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 IGHV1-45A0A0A0MS14 117 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 A0A1W2PQ72 361 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 DAPL1A0PJW8 107 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 PTP4A3O75365 173 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 UMODP07911 640 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 SLC2A2P11168 524 aaPredicted RBP15.28■□□□□ 0.04
CPSF4-201ENST00000292476 ZNF3P17036 446 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 TCN2P20062 427 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 SSPNQ14714 243 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 PCOLCEQ15113 449 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 KIF26BQ2KJY2 2108 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 ALG10BQ5I7T1 473 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 ARHGAP11AQ6P4F7 1023 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 TPRA1Q86W33 373 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 C19orf18Q8NEA5 215 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 TTC9Q92623 222 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 FRMD6Q96NE9 622 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 LMF1Q96S06 567 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 HDHD5Q9BXW7 423 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 GPR87Q9BY21 358 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 SPRY4Q9C004 299 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 RNF32Q9H0A6 362 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 RNF121Q9H920 327 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 C20orf141Q9NUB4 165 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 COMMD3Q9UBI1 195 aa15.28■□□□□ 0.04
CPSF4-201ENST00000292476 FARSAQ9Y285 508 aaKnown RBP15.28■□□□□ 0.04
CPSF4-201ENST00000292476 CDC14CA4D256 554 aa15.27■□□□□ 0.03
CPSF4-201ENST00000292476 FAM172BPA6NC97 362 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms