RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SNX33Q8WV41 574 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 HRASLS2Q9NWW9 162 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 DUXAA6NLW8 204 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 B3GALT2O43825 422 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 FMO6PO60774 539 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 ATP1B1P05026 303 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 H2AFB2P0C5Z0 115 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 EN2P19622 333 aaPredicted RBP9.76□□□□□ -0.85
USP28-201ENST00000003302 ESCO2Q56NI9 601 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 WDR45BQ5MNZ6 344 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 PRAMEF8Q5VWM4 474 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 PRAMEF7Q5VXH5 474 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 OR13H1Q8NG92 308 aa9.76□□□□□ -0.85
USP28-201ENST00000003302 ZC3H10Q96K80 434 aaKnown RBP9.76□□□□□ -0.85
USP28-201ENST00000003302 FAM86C2PA6NEL3 165 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 GPR75O95800 540 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 F8A1P23610 371 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 NRG3P56975 720 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 ARPC4P59998 168 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 RGS1Q08116 209 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 PYHIN1Q6K0P9 492 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 RNF44Q7L0R7 432 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 KDM8Q8N371 416 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 DPAGT1Q9H3H5 408 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 FLRT2O43155 660 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 PLGP00747 810 aaPredicted RBP9.75□□□□□ -0.85
USP28-201ENST00000003302 DBIP07108 87 aaKnown RBP9.75□□□□□ -0.85
USP28-201ENST00000003302 THBS1P07996 1170 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 LIPCP11150 499 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 MMP15P51511 669 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 KIAA1024LP59773 190 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 GPM6BQ13491 265 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 ALKAL2Q6UX46 152 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 C16orf47Q6ZP98 133 aaPredicted RBP9.75□□□□□ -0.85
USP28-201ENST00000003302 RNF144BQ7Z419 303 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 SLC35F2Q8IXU6 374 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 UXS1Q8NBZ7 420 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 MNTQ99583 582 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 MRM2Q9UI43 246 aaKnown RBP9.75□□□□□ -0.85
USP28-201ENST00000003302 ZNF230Q9UIE0 474 aaPredicted RBP9.75□□□□□ -0.85
USP28-201ENST00000003302 GALR3O60755 368 aaPredicted RBP9.75□□□□□ -0.85
USP28-201ENST00000003302 UBL3O95164 117 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 APBB3O95704 486 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 ANXA3P12429 323 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 ZNF3P17036 446 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 CCR4P51679 360 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 BLVRAP53004 296 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 PWWP2BQ6NUJ5 590 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 CCDC28AQ8IWP9 274 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.75□□□□□ -0.85
USP28-201ENST00000003302 LINC00052Q96N35 136 aa9.75□□□□□ -0.85
USP28-201ENST00000003302 TMEM272A0A1B0GTI8 110 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 IFITM5A6NNB3 132 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 PYCARD-AS1I3L0S3 204 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 OGG1O15527 345 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 LMX1BO60663 402 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 KLF8O95600 359 aaPredicted RBP9.74□□□□□ -0.85
USP28-201ENST00000003302 RPS15AP62244 130 aaKnown RBP9.74□□□□□ -0.85
USP28-201ENST00000003302 DMWDQ09019 674 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 MEP1BQ16820 701 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 OR10K2Q6IF99 312 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 C17orf107Q6ZR85 190 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 RAB42Q8N4Z0 105 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 C16orf52Q8NHV5 167 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 SMIM4Q8WVI0 70 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 RIT1Q92963 219 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 MRGPRX1Q96LB2 322 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 SERINC2Q96SA4 455 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 ZFYVE21Q9BQ24 234 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 PITHD1Q9GZP4 211 aaPredicted RBP9.74□□□□□ -0.85
USP28-201ENST00000003302 CALML5Q9NZT1 146 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 ERVK-19Q9WJR5 959 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 ENTPD2Q9Y5L3 495 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 MEIKINA0A087WXM9 373 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 LOC101059948A0A1B0GTJ6 334 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 H0YIG0 161 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 AKR7A3O95154 331 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 PDGFAP04085 211 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 TPOP07202 933 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 MAP2K6P52564 334 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 SNTA1Q13424 505 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 SMAD2Q15796 467 aaKnown RBP9.74□□□□□ -0.85
USP28-201ENST00000003302 LIPNQ5VXI9 398 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 OR7E24Q6IFN5 339 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 MOAP1Q96BY2 351 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 KTI12Q96EK9 354 aaPredicted RBP9.74□□□□□ -0.85
USP28-201ENST00000003302 DUSP22Q9NRW4 184 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 LRP4O75096 1905 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 FGF19O95750 216 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 HOXB2P14652 356 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 LEG1Q6P5S2 330 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 LINC00114Q6XXX2 140 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 RTL4Q6ZR62 310 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 DPY19L4Q7Z388 723 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 OR6V1Q8N148 313 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 CSNK1A1LQ8N752 337 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 CDRT4Q8N9R6 151 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 SYNPRQ8TBG9 265 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 RLN3Q8WXF3 142 aa9.74□□□□□ -0.85
USP28-201ENST00000003302 SLC25A28Q96A46 364 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms