RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FBXW12Q6X9E4 464 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR2W3Q7Z3T1 314 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR4F15Q8NGB8 312 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR5L2Q8NGL0 311 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR5AK3PQ8NH89 298 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR1S1Q8NH92 325 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GPR119Q8TDV5 335 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 DVL3Q92997 716 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NSUN5Q96P11 429 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PLEKHA3Q9HB20 300 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF814B7Z6K7 855 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 KLK1P06870 262 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 TFPIP10646 304 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PXNP49023 591 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GSK3AP49840 483 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 AGTR2P50052 363 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NOVA1P51513 510 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CATSPEREQ5SY80 951 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 C18orf63Q68DL7 685 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 LRRTM4Q86VH4 590 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MCEMP1Q8IX19 187 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SLC39A11Q8N1S5 342 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 LINC01599Q8WXQ3 324 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PSMF1Q92530 271 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PARP11Q9NR21 331 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 UQCC1Q9NVA1 299 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GIMAP2Q9UG22 337 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 USP21Q9UK80 565 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 HEMK1Q9Y5R4 338 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 C5orf52A6NGY3 159 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CD300LBA8K4G0 201 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF593O00488 134 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CH25HO95992 272 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MBPP02686 304 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ITGB8P26012 769 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 BMPR1AP36894 532 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ADIRFQ15847 76 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SMN1Q16637 294 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PNLIPRP3Q17RR3 467 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 EXOSC6Q5RKV6 272 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 FBXL22Q6P050 247 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 FBXO16Q8IX29 292 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR14A16Q8NHC5 309 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SOCS4Q8WXH5 440 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR52D1Q9H346 318 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 HRASLSQ9HDD0 168 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 C4AP0C0L4 1744 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 C4BP0C0L5 1744 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CASTOR2A6NHX0 329 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 AGPAT2O15120 278 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 APBB3O95704 486 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SERPINE2P07093 398 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 CDKN2DP55273 166 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 EIF2B1Q14232 305 aaKnown RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 MELKQ14680 651 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 IAH1Q2TAA2 248 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ARSIQ5FYB1 569 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GPR135Q8IZ08 494 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FIBINQ8TAL6 211 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 F2RL3Q96RI0 385 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FLVCR2Q9UPI3 526 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF337Q9Y3M9 751 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 LSM5Q9Y4Y9 91 aaKnown RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 A8MUA0 341 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 PIRO00625 290 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 CD1AP06126 327 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 CTXN2P0C2S0 81 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SLC25A4P12235 298 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 HLA-DOBP13765 273 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GNSP15586 552 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ACTR1BP42025 376 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TCTAP57738 103 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 CRHR2Q13324 411 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 IL10RAQ13651 578 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ETFDHQ16134 617 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 C11orf87Q6NUJ2 197 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GKN2Q86XP6 184 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FAM217AQ8IXS0 508 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM239Q8WW34 195 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 C22orf15Q8WYQ4 148 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SENP5Q96HI0 755 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SLC46A1Q96NT5 459 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SOHLH2Q9NX45 425 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FBXW2Q9UKT8 454 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 A0A0B4J2A0 478 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GABRR3A8MPY1 467 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 HPNP05981 417 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 OR12D1P0DN82 309 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TAS2R60P59551 318 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GUCA2BQ16661 112 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 RNF151Q2KHN1 245 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 LGALSLQ3ZCW2 172 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 AARDQ4LEZ3 155 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ETFRF1Q6IPR1 90 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TMPPEQ6ZT21 453 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 DND1Q8IYX4 353 aaKnown RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SLC26A10Q8NG04 563 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 RAB7BQ96AH8 199 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SUSD3Q96L08 255 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 PACRGQ96M98 296 aaPredicted RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms