RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 WDR43Q15061 677 aaKnown RBP eCLIP1.84□□□□□ -2.11
CD44-239ENST00000639002 MAPK6Q16659 721 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 IMMTQ16891 758 aaKnown RBP1.84□□□□□ -2.11
CD44-239ENST00000639002 RABL6Q3YEC7 729 aaPredicted RBP1.84□□□□□ -2.11
CD44-239ENST00000639002 CFAP157Q5JU67 520 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 RIPPLY2Q5TAB7 128 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 SLC25A24Q6NUK1 477 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 NIPAL3Q6P499 406 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 OTUD6AQ7L8S5 288 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 APTXQ7Z2E3 356 aaKnown RBP1.84□□□□□ -2.11
CD44-239ENST00000639002 CTAGE6Q86UF2 777 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 TMEM17Q86X19 198 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 LRRC43Q8N309 656 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 CNDP1Q96KN2 507 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 PLIN2Q99541 437 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 GPA33Q99795 319 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 TPPP3Q9BW30 176 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 ZNF416Q9BWM5 594 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 ECT2Q9H8V3 914 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 WDR76Q9H967 626 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 FARSBQ9NSD9 589 aaKnown RBP1.84□□□□□ -2.11
CD44-239ENST00000639002 NMRK1Q9NWW6 199 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 AIPL1Q9NZN9 384 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 CRCT1Q9UGL9 99 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 PCSK1NQ9UHG2 260 aa1.84□□□□□ -2.11
CD44-239ENST00000639002 IGSF9BQ9UPX0 1349 aa1.84□□□□□ -2.12
CD44-239ENST00000639002 BAHCC1Q9P281 2608 aa1.84□□□□□ -2.12
CD44-239ENST00000639002 LRRIQ4A6NIV6 560 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 ZNF233A6NK53 670 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 A8MUI8 341 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 E7ESA3 106 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 CLDN5O00501 218 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 STX7O15400 261 aaKnown RBP1.83□□□□□ -2.12
CD44-239ENST00000639002 UGT2B17O75795 530 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 B3GAT3O94766 335 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 DIRAS3O95661 229 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 AK1P00568 194 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 OPN1LWP04000 364 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 IGF1P05019 195 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 RBMY1CP0DJD4 496 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 NCF1P14598 390 aaPredicted RBP1.83□□□□□ -2.12
CD44-239ENST00000639002 ADRA1AP35348 466 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 SOX6P35712 828 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 MDH1P40925 334 aaKnown RBP1.83□□□□□ -2.12
CD44-239ENST00000639002 ARFIP1P53367 373 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 ZMYND11Q15326 602 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 PPP1R7Q15435 360 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 TATDN3Q17R31 274 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 SLC5A12Q1EHB4 618 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 MAJINQ3KP22 176 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 HSP90B2PQ58FF3 399 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 PRR9Q5T870 116 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 ATL3Q6DD88 541 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 C11orf71Q6IPW1 123 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 ACSM5Q6NUN0 579 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 C16orf87Q6PH81 154 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 SYT10Q6XYQ8 523 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 TAS2R42Q7RTR8 314 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 LHFPL4Q7Z7J7 247 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 PCP2Q8IVA1 136 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 ARRDC1Q8N5I2 433 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 OR56B2PQ8NGI1 322 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 TCTEX1D2Q8WW35 142 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 CCT7Q99832 543 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 DUSP16Q9BY84 665 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 CLSTN2Q9H4D0 955 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 VCPKMTQ9H867 229 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 COQ10BQ9H8M1 238 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 LRRC40Q9H9A6 602 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 CCL28Q9NRJ3 127 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 MRPS7Q9Y2R9 242 aaKnown RBP1.83□□□□□ -2.12
CD44-239ENST00000639002 TMED5Q9Y3A6 229 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 MFHAS1Q9Y4C4 1052 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 U3KQV3 271 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 KIF16BQ96L93 1317 aa1.83□□□□□ -2.12
CD44-239ENST00000639002 PLA2R1Q13018 1463 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 C15orf38-AP3S2A0A0A6YYH1 394 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 A0A0U1RQV5 110 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 A0A1B0GUL7 405 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 A6NIZ1 184 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 F8WDY8 70 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 H0Y8G0 127 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 BET1O15155 118 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 MAGEB3O15480 346 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 MTX2O75431 263 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 LRATO95237 230 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 MBD3O95983 291 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 IGKV4-1P06312 121 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 PPIAL4GP0DN37 164 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 GLRA2P23416 452 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 HTR2AP28223 471 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 GDI1P31150 447 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 SSR1P43307 286 aaKnown RBP1.82□□□□□ -2.12
CD44-239ENST00000639002 ATP5OP48047 213 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 KPNA2P52292 529 aaKnown RBP1.82□□□□□ -2.12
CD44-239ENST00000639002 RAP1BP61224 184 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 ENPEPQ07075 957 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 ELP6Q0PNE2 266 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 CUL2Q13617 745 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 NSUN5P1Q3KNT7 163 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms