RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 OR5M1Q8NGP8 315 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 OR5J2Q8NH18 312 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 ZNF420Q8TAQ5 688 aaPredicted RBP15.23■□□□□ 0.03
CLN3-252ENST00000636907 RASD2Q96D21 266 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 ARL5BQ96KC2 179 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 STMN3Q9NZ72 180 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 SLC6A5Q9Y345 797 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 GVINP1Q7Z2Y8 2422 aa15.23■□□□□ 0.03
CLN3-252ENST00000636907 DOCK10Q96BY6 2186 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 ZNF701M0R085 212 aaPredicted RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 IDH3BO43837 385 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 OR2T1O43869 369 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 TRMUO75648 421 aaKnown RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 DXOO77932 396 aaKnown RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 P04436 131 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 CLUP10909 449 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 CYB561P49447 251 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 AIMP2Q13155 320 aaKnown RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 SGCBQ16585 318 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 TIGD6Q17RP2 521 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 KLHL12Q53G59 568 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 ATP1A1-AS1Q5TC04 95 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 SLC6A19Q695T7 634 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 PAQR6Q6TCH4 344 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 B3GLCTQ6Y288 498 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 FAM122BQ7Z309 247 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 VASH2Q86V25 355 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 GPALPP1Q8IXQ4 340 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 OR4F15Q8NGB8 312 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 OR1J4Q8NGS1 313 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 OR6S1Q8NH40 331 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 C12orf43Q96C57 262 aaKnown RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 DDIT4LQ96D03 193 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 YIPF6Q96EC8 236 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 TMEM41AQ96HV5 264 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 FER1L6-AS2Q96M78 137 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 Q96M85 177 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 GNRHR2Q96P88 292 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 OR5M11Q96RB7 305 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 DOK1Q99704 481 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 FUNDC2Q9BWH2 189 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 OR51V1Q9H2C8 321 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 TAS2R5Q9NYW4 299 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 EXOGQ9Y2C4 368 aaKnown RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 A0A087WZY1 265 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 A0A0G2JMM0 328 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 TEX13CA0A0J9YWL9 993 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 A0A1W2PPB8 328 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 A0A1W2PRS3 328 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 CCDC182A6NF36 153 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 KIR3DP1A8MWS1 328 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 H3BML4 177 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 SNX4O95219 450 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 F10P00742 488 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 APEHP13798 732 aaKnown RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 PAICSP22234 425 aaKnown RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 SLC2A5P22732 501 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 DNASE1L1P49184 302 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 ETV1P50549 477 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 MAP2K6P52564 334 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 DOC2BQ14184 412 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 TIGD3Q6B0B8 471 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 B3GNT6Q6ZMB0 384 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 ZNF367Q7RTV3 350 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 PSD4Q8NDX1 1056 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 ZPLD1Q8TCW7 415 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 KISS1RQ969F8 398 aaPredicted RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 ZBTB8AQ96BR9 441 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 JSRP1Q96MG2 331 aaPredicted RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 SACM1LQ9NTJ5 587 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 TEKT2Q9UIF3 430 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 ERGIC3Q9Y282 383 aa15.22■□□□□ 0.03
CLN3-252ENST00000636907 LSM2Q9Y333 95 aaKnown RBP15.22■□□□□ 0.03
CLN3-252ENST00000636907 CNOT1A5YKK6 2376 aaKnown RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 C11orf98E9PRG8 122 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 H3BMQ9 156 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 IMPA2O14732 288 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 TRIM3O75382 744 aaPredicted RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 GYPBP06028 91 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 TFPIP10646 304 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 IMPDH2P12268 514 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 DPP4P27487 766 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 ADH6P28332 368 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 GSTT1P30711 240 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 EIF1P41567 113 aaKnown RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 TMBIM6P55061 237 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 RPS7P62081 194 aaKnown RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 OC90Q02509 493 aaPredicted RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 SRSF6Q13247 344 aaKnown RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 CAMK2BQ13554 666 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 MED22Q15528 200 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 ABHD17BQ5VST6 288 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 NANOGP1Q8N7R0 232 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 LSM14AQ8ND56 463 aaKnown RBP15.21■□□□□ 0.03
CLN3-252ENST00000636907 NPEPL1Q8NDH3 523 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 OR51G2Q8NGK0 314 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 OR9Q1Q8NGQ5 310 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 MFSD8Q8NHS3 518 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 ZNF417Q8TAU3 575 aa15.21■□□□□ 0.03
CLN3-252ENST00000636907 COG8Q96MW5 612 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms