RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-223	ENST00000629179	AAED1	Q7RTV5	226 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	SPATA21	Q7Z572	469 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	RANBP3L	Q86VV4	465 aa	Predicted RBP	12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	RBM45	Q8IUH3	476 aa	Known RBP	12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	KDM8	Q8N371	416 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	OR6T1	Q8NGN1	323 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	RP9	Q8TA86	221 aa	Known RBP	12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	VANGL1	Q8TAA9	524 aa	Predicted RBP	12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	FOXC2	Q99958	501 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	FAM107B	Q9H098	131 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	EVA1A	Q9H8M9	152 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	UBTD1	Q9HAC8	227 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	SLC7A10	Q9NS82	523 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	ASB6	Q9NWX5	421 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	SELENON	Q9NZV5	590 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	SEC14L4	Q9UDX3	406 aa		12.53	□□□□□ -0.4
PNKP-223	ENST00000629179	CIB4	A0PJX0	185 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	CCT8L1P	A6NM43	557 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	CPSF4L	A6NMK7	179 aa	Known RBP	12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	AIM2	O14862	343 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	RAD51D	O75771	328 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	GGT1	P19440	569 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	CBL	P22681	906 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	TSPO2	Q5TGU0	170 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	C9orf135	Q5VTT2	229 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	SEZ6L2	Q6UXD5	910 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	TREML1	Q86YW5	311 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	TMEM45B	Q96B21	275 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	MBD6	Q96DN6	1003 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	USB1	Q9BQ65	265 aa	Known RBP	12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	CXXC4	Q9H2H0	198 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	UPB1	Q9UBR1	384 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	MALT1	Q9UDY8	824 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	RASD1	Q9Y272	281 aa		12.52	□□□□□ -0.41
PNKP-223	ENST00000629179	TRAV36DV7	A0A075B6V5	113 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179		M0R082	166 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	OR2T1	O43869	369 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	FMO6P	O60774	539 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	VAMP5	O95183	116 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	ITGA5	P08648	1049 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	DRD4	P21917	467 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	GTF2E2	P29084	291 aa	Known RBP	12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	GRPR	P30550	384 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	NR1H2	P55055	460 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	LTB	Q06643	244 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	VEZF1	Q14119	521 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	PPA1	Q15181	289 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	ACKR1	Q16570	336 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	DEFB113	Q30KQ7	82 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	ENTPD8	Q5MY95	495 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	NCMAP	Q5T1S8	102 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	FAM69A	Q5T7M9	428 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	ERICH5	Q6P6B1	374 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	C5orf46	Q6UWT4	87 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	ZNF704	Q6ZNC4	412 aa	Predicted RBP	12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	CREB3L2	Q70SY1	520 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	TSPYL5	Q86VY4	417 aa	Predicted RBP	12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	EPHX4	Q8IUS5	362 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	ZNF417	Q8TAU3	575 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	MUCL1	Q96DR8	90 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	ALPK1	Q96QP1	1244 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	ZNF587	Q96SQ5	575 aa	Predicted RBP	12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	CMTM6	Q9NX76	183 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	TAS2R16	Q9NYV7	291 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	GMPR2	Q9P2T1	348 aa	Known RBP	12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	MTOR	P42345	2549 aa		12.51	□□□□□ -0.41
PNKP-223	ENST00000629179	FLNA	P21333	2647 aa	Known RBP	12.5	□□□□□ -0.41
PNKP-223	ENST00000629179		A0A1W2PR80	420 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	DPRX	A6NFQ7	191 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	OR5H1	A6NKK0	313 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	FAM220BP	B1ANY3	271 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	PDLIM1	O00151	329 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	FZD7	O75084	574 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	LYPD3	O95274	346 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	BGLAP	P02818	100 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	THY1	P04216	161 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	TNFRSF1B	P20333	461 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	LSP1	P33241	339 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	SELENOP	P49908	381 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	LGALS3BP	Q08380	585 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	TIMM23B	Q5SRD1	257 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	ZNF613	Q6PF04	617 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	LINC00114	Q6XXX2	140 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	WDR88	Q6ZMY6	472 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	H1FNT	Q75WM6	255 aa	Predicted RBP	12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	P2RY8	Q86VZ1	359 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	SLC15A3	Q8IY34	581 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	MICU2	Q8IYU8	434 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	OR2T12	Q8NG77	320 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	OR52N5	Q8NH56	324 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	ADAMTS16	Q8TE57	1224 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	RASSF5	Q8WWW0	418 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	OXGR1	Q96P68	337 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	TMEM204	Q9BSN7	226 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	MYLK2	Q9H1R3	596 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	SLCO5A1	Q9H2Y9	848 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	NGB	Q9NPG2	151 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	SH3GLB1	Q9Y371	365 aa		12.5	□□□□□ -0.41
PNKP-223	ENST00000629179	GMNC	A6NCL1	334 aa		12.49	□□□□□ -0.41
PNKP-223	ENST00000629179	LRRN3	E7EW58	273 aa		12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms