RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 PIAS4Q8N2W9 510 aaPredicted RBP9.55□□□□□ -0.88
VPS11-208ENST00000621676 C4orf36Q96KX1 117 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 LMF2Q9BU23 707 aaKnown RBP9.55□□□□□ -0.88
VPS11-208ENST00000621676 STRADBQ9C0K7 418 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 KCNN2Q9H2S1 579 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 C14orf119Q9NWQ9 140 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 FARSAQ9Y285 508 aaKnown RBP9.55□□□□□ -0.88
VPS11-208ENST00000621676 RPL36Q9Y3U8 105 aaKnown RBP9.55□□□□□ -0.88
VPS11-208ENST00000621676 MMACHCQ9Y4U1 282 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 CDH10Q9Y6N8 788 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 IGKV1D-42A0A075B6H8 117 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 SURF4O15260 269 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 OR8G3PP0DMU2 310 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 PMP22Q01453 160 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 TAB1Q15750 504 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 C6orf15Q6UXA7 325 aaPredicted RBP9.55□□□□□ -0.88
VPS11-208ENST00000621676 MFRPQ9BY79 579 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 FAM192AQ9GZU8 254 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 GABARAPL1Q9H0R8 117 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 UCK1Q9HA47 277 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 FBXO4Q9UKT5 387 aa9.55□□□□□ -0.88
VPS11-208ENST00000621676 SAGE2PA6NJ88 616 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 ITGB2P05107 769 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 SPARCP09486 303 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 PATE4P0C8F1 98 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 RGS6P49758 472 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 OR2B6P58173 313 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 GALK2Q01415 458 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 WIPI1Q5MNZ9 446 aaPredicted RBP9.54□□□□□ -0.88
VPS11-208ENST00000621676 EEF1A1P5Q5VTE0 462 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 PRAMEF8Q5VWM4 474 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 PRAMEF7Q5VXH5 474 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 CDCP2Q5VXM1 449 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 VASNQ6EMK4 673 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 PRSS48Q7RTY5 328 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 WDFY1Q8IWB7 410 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 TMEM163Q8TC26 289 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 MVB12AQ96EY5 273 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 UCN2Q96RP3 112 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 TEAD3Q99594 435 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 EXO5Q9H790 373 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 GALNT8Q9NY28 637 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 ACAD8Q9UKU7 415 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 SIRT4Q9Y6E7 314 aaPredicted RBP9.54□□□□□ -0.88
VPS11-208ENST00000621676 FMO6PO60774 539 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 GPX5O75715 221 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 THBS1P07996 1170 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 CELA3AP09093 270 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 ENPP1P22413 925 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 OPRL1P41146 370 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 MAP3K8P41279 467 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 CLDN12P56749 244 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 DNASE1L3Q13609 305 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 FAM198BQ6UWH4 519 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 SLC16A12Q6ZSM3 486 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 RASSF6Q6ZTQ3 369 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 BMPERQ8N8U9 685 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS11-208ENST00000621676 TESQ9UGI8 421 aaKnown RBP9.54□□□□□ -0.88
VPS11-208ENST00000621676 MRTO4Q9UKD2 239 aaKnown RBP9.54□□□□□ -0.88
VPS11-208ENST00000621676 KLK4Q9Y5K2 254 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 A0A1W2PQL4 384 aaPredicted RBP9.54□□□□□ -0.88
VPS11-208ENST00000621676 RCBTB2O95199 551 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 IFNGR1P15260 489 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 GABRB1P18505 474 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 FPR3P25089 353 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 ZNF41P51814 821 aaPredicted RBP9.54□□□□□ -0.88
VPS11-208ENST00000621676 CDK5Q00535 292 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 Q0VFX4 171 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 WBP2NLQ6ICG8 309 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 ADGRG3Q86Y34 549 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 BEST3Q8N1M1 668 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 SLC15A4Q8N697 577 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 C17orf47Q8NEP4 570 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 OR14L1PQ8NHC6 308 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 ROBO4Q8WZ75 1007 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 SLC25A18Q9H1K4 315 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 ERVK13-1Q9NX77 482 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 IL20Q9NYY1 176 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 SH3BGRL2Q9UJC5 107 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 ICAM5Q9UMF0 924 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 CFL2Q9Y281 166 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 POLR1DQ9Y2S0 133 aa9.54□□□□□ -0.88
VPS11-208ENST00000621676 A0A087WUJ7 227 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 FRG2CA6NGY1 282 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 ZNF814B7Z6K7 855 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 XKRYO14609 159 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 FTH1P19P0C7X4 201 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 ZNF3P17036 446 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 SDC2P34741 201 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 SLC1A3P43003 542 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 TLE3Q04726 772 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 ZFP36L1Q07352 338 aaKnown RBP9.53□□□□□ -0.88
VPS11-208ENST00000621676 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS11-208ENST00000621676 C1DQ13901 141 aaKnown RBP9.53□□□□□ -0.88
VPS11-208ENST00000621676 SSX1Q16384 188 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 LRRN1Q6UXK5 716 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 LRRC18Q8N456 261 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 SVOPQ8N4V2 548 aa9.53□□□□□ -0.88
VPS11-208ENST00000621676 FAM181AQ8N9Y4 354 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms