RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 C2orf68Q2NKX9 166 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 FAAP20Q6NZ36 180 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 LPCAT3Q6P1A2 487 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 RPL22L1Q6P5R6 122 aaKnown RBP9.96□□□□□ -0.82
UPF3A-212ENST00000619079 DNM1P46Q6ZS02 220 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 FCRLAQ7L513 359 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 GDF7Q7Z4P5 450 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF740Q8NDX6 193 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 OR56A1Q8NGH5 318 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 OR1J4Q8NGS1 313 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 SYNPRQ8TBG9 265 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 WFDC5Q8TCV5 224 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 SUSD6Q92537 303 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 MRPL48Q96GC5 212 aaKnown RBP9.96□□□□□ -0.82
UPF3A-212ENST00000619079 AMDHD1Q96NU7 426 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 CRB3Q9BUF7 120 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 CPEB1Q9BZB8 566 aaKnown RBP9.96□□□□□ -0.82
UPF3A-212ENST00000619079 FAM117AQ9C073 453 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 ALX4Q9H161 411 aaPredicted RBP9.96□□□□□ -0.82
UPF3A-212ENST00000619079 RHBGQ9H310 441 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM185BQ9H7F4 350 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 ADAM29Q9UKF5 820 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 MKL2Q9ULH7 1088 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 SLC35A3Q9Y2D2 325 aa9.96□□□□□ -0.82
UPF3A-212ENST00000619079 CDC42EP2O14613 210 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 RDH16O75452 317 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 RBBP9O75884 186 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 CD8AP01732 235 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 MRPL3P09001 348 aaKnown RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 ZGLP1P0C6A0 271 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 IL9P15248 144 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 TRHRP34981 398 aaPredicted RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 TRA2BP62995 288 aaKnown RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 SIRPAP78324 504 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 TGM3Q08188 693 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 HES5Q5TA89 166 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 GLT8D1Q68CQ7 371 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 H3F3CQ6NXT2 135 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 JMJD6Q6NYC1 403 aaPredicted RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 HMGN2P46Q86SG4 172 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM150AQ86TG1 271 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 GLB1L2Q8IW92 636 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM255BQ8WV15 326 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 NXPE3Q969Y0 559 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 MIB2Q96AX9 1013 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 HS6ST2Q96MM7 605 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 OR14A2Q96R54 314 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 MCHR1Q99705 422 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 OR51V1Q9H2C8 321 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 C5AR2Q9P296 337 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 LRRC72A6NJI9 287 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 ACOD1A6NK06 481 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 PIP5K1CO60331 668 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 PAX6P26367 422 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 BDKRB2P30411 391 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 TAS2R38P59533 333 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 TAS2R20P59543 309 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 STXBP1P61764 594 aaKnown RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 ECH1Q13011 328 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 PDZK1IP1Q13113 114 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 LASP1Q14847 261 aaKnown RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 CSRP2Q16527 193 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 C4orf46Q504U0 113 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 PRAMEF14Q5SWL7 426 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 PWWP2BQ6NUJ5 590 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 UNQ9370/PRO34162Q6UXP9 181 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 DBX2Q6ZNG2 339 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 OLIG3Q7RTU3 272 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 C12orf40Q86WS4 652 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 BEST3Q8N1M1 668 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 ARL14EPQ8N8R7 260 aaPredicted RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 C2CD4CQ8TF44 421 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 KLK6Q92876 244 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 SCAMP4Q969E2 229 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 ARL11Q969Q4 196 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 WBP2Q969T9 261 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 SMAD5Q99717 465 aaKnown RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 PHF7Q9BWX1 381 aaPredicted RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF471Q9BX82 626 aaPredicted RBP9.95□□□□□ -0.82
UPF3A-212ENST00000619079 HCAR1Q9BXC0 346 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 MS4A8Q9BY19 250 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 GLIPR2Q9H4G4 154 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 RNF122Q9H9V4 155 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 APMAPQ9HDC9 416 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 NIT2Q9NQR4 276 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 C14orf105Q9NVL8 296 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 UPB1Q9UBR1 384 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 V9GY05 133 aa9.95□□□□□ -0.82
UPF3A-212ENST00000619079 TRAV14DV4A0A0A6YYC5 116 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 TRBV2A0A0J9YWF9 115 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 TMEM272A0A1B0GTI8 110 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 H7BY64 318 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 H7C417 338 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 NRG2O14511 850 aaPredicted RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SCAMP1O15126 338 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 FRS3O43559 492 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 RNGTTO60942 597 aaKnown RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 PAPLNO95428 1278 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 PMS2P2O95744 297 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms