RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DOCK7Q96N67 2140 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 AQP7P3A6NL99 342 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 H3BNX3 289 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 M0R082 166 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 CLOCKO15516 846 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 LRRTM2O43300 516 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 HNRNPRO43390 633 aaKnown RBP17.59■□□□□ 0.41
UPF3A-211ENST00000618700 RRP9O43818 475 aaKnown RBP17.59■□□□□ 0.41
UPF3A-211ENST00000618700 CYTIPO60759 359 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 RAMP1O60894 148 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 AKR7A3O95154 331 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 RCBTB2O95199 551 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 CH25HO95992 272 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 GRPRP30550 384 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 PMPCAQ10713 525 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 GUSBP1Q15486 140 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 ATP6AP1Q15904 470 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 OTUD3Q5T2D3 398 aaPredicted RBP17.59■□□□□ 0.41
UPF3A-211ENST00000618700 PPP4R4Q6NUP7 873 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 ZFP1Q6P2D0 407 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 P4HA3Q7Z4N8 544 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 FJX1Q86VR8 437 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 SLC43A2Q8N370 569 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 TMEM99Q8N816 258 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 SCAIQ8N9R8 606 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 ZNF417Q8TAU3 575 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 PIGXQ8TBF5 258 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 ABHD3Q8WU67 409 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 LIPHQ8WWY8 451 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 BPIFA2Q96DR5 249 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 SGTBQ96EQ0 304 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 ZFP3Q96NJ6 502 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 ZNF587Q96SQ5 575 aaPredicted RBP17.59■□□□□ 0.41
UPF3A-211ENST00000618700 NAA11Q9BSU3 229 aaPredicted RBP17.59■□□□□ 0.41
UPF3A-211ENST00000618700 PRRG4Q9BZD6 226 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 CHST11Q9NPF2 352 aa17.59■□□□□ 0.41
UPF3A-211ENST00000618700 ING1Q9UK53 422 aaPredicted RBP17.59■□□□□ 0.41
UPF3A-211ENST00000618700 SAMHD1Q9Y3Z3 626 aaKnown RBP17.59■□□□□ 0.41
UPF3A-211ENST00000618700 DEAF1O75398 565 aaPredicted RBP17.58■□□□□ 0.4
UPF3A-211ENST00000618700 OR7A10O76100 309 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 ASAH2BP0C7U1 165 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 FCGR1AP12314 374 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 IFI30P13284 250 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 MAKP20794 623 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 CBLP22681 906 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 GTF2E2P29084 291 aaKnown RBP17.58■□□□□ 0.4
UPF3A-211ENST00000618700 OMPP47874 163 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 RNPS1Q15287 305 aaKnown RBP17.58■□□□□ 0.4
UPF3A-211ENST00000618700 OR2A2Q6IF42 318 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 MAMDC2Q7Z304 686 aaPredicted RBP17.58■□□□□ 0.4
UPF3A-211ENST00000618700 CCDC103Q8IW40 242 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 C10orf67Q8IYJ2 551 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 C10orf53Q8N6V4 93 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 NAXEQ8NCW5 288 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 CCDC120Q96HB5 630 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 ASPNQ9BXN1 380 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 NANSQ9NR45 359 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 MRPL39Q9NYK5 338 aaKnown RBP17.58■□□□□ 0.4
UPF3A-211ENST00000618700 TMCC3Q9ULS5 477 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 TMEM5Q9Y2B1 443 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 B3GALT5Q9Y2C3 310 aa17.58■□□□□ 0.4
UPF3A-211ENST00000618700 ZNF716A6NP11 495 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 KLF4O43474 513 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 LDLRP01130 860 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 FASP25445 335 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 SLC16A1P53985 500 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 ADORA2A-AS1P86434 159 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 PPP1R8Q12972 351 aaKnown RBP17.57■□□□□ 0.4
UPF3A-211ENST00000618700 PDK3Q15120 406 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 ZNF770Q6IQ21 691 aaPredicted RBP17.57■□□□□ 0.4
UPF3A-211ENST00000618700 MTFR2Q6P444 385 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 H1FNTQ75WM6 255 aaPredicted RBP17.57■□□□□ 0.4
UPF3A-211ENST00000618700 RRM2BQ7LG56 351 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 GCNT2Q8N0V5 402 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 LRRC17Q8N6Y2 441 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 OR5J2Q8NH18 312 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 GMPPAQ96IJ6 420 aaPredicted RBP17.57■□□□□ 0.4
UPF3A-211ENST00000618700 PSD2Q9BQI7 771 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 NTN4Q9HB63 628 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 GP6Q9HCN6 339 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 GLRX2Q9NS18 164 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 KLHL9Q9P2J3 617 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 SLC5A6Q9Y289 635 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 U3KQV3 271 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 MED12LQ86YW9 2145 aa17.57■□□□□ 0.4
UPF3A-211ENST00000618700 NCOA6Q14686 2063 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-211ENST00000618700 TENM4Q6N022 2769 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 IGKV3D-15A0A087WSY6 115 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 A0A0G2JNJ9 132 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 A0A1W2PNV4 684 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 CDC42EP2O14613 210 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 SS18L1O75177 396 aaPredicted RBP17.56■□□□□ 0.4
UPF3A-211ENST00000618700 CCNB2O95067 398 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 IL2RAP01589 272 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 CRHP06850 196 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 TSPAN19P0C672 248 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 DNAJA1P31689 397 aaKnown RBP17.56■□□□□ 0.4
UPF3A-211ENST00000618700 GPR4P46093 362 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 IST1P53990 364 aa17.56■□□□□ 0.4
UPF3A-211ENST00000618700 PER3P56645 1201 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms