RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TFPIP10646 304 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 PPIBP23284 216 aaKnown RBP16.68■□□□□ 0.26
CDX1-202ENST00000616154 ACAA2P42765 397 aaKnown RBP16.68■□□□□ 0.26
CDX1-202ENST00000616154 MNAT1P51948 309 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 POLR2HP52434 150 aaKnown RBP16.68■□□□□ 0.26
CDX1-202ENST00000616154 SLC16A1P53985 500 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 H3F3AP84243 136 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 NRF1Q16656 503 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 TRMT5Q32P41 509 aaKnown RBP16.68■□□□□ 0.26
CDX1-202ENST00000616154 AGAP6Q5VW22 663 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 VRK2Q86Y07 508 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 PCYOX1LQ8NBM8 494 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 PIGXQ8TBF5 258 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 APH1AQ96BI3 265 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 ARL5BQ96KC2 179 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 SPATA9Q9BWV2 254 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 RLIMQ9NVW2 624 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 VAPAQ9P0L0 249 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 SLAMF8Q9P0V8 285 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 MGAT4BQ9UQ53 548 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 TRAPPC4Q9Y296 219 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 ZNF443Q9Y2A4 671 aaPredicted RBP16.68■□□□□ 0.26
CDX1-202ENST00000616154 B3GALT5Q9Y2C3 310 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 NOSIPQ9Y314 301 aaKnown RBP16.68■□□□□ 0.26
CDX1-202ENST00000616154 IFT52Q9Y366 437 aa16.68■□□□□ 0.26
CDX1-202ENST00000616154 CUBNO60494 3623 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 TMEM247A6NEH6 219 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 GPR171O14626 319 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 RAD51DO75771 328 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 IGHV3-9P01782 118 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 ARAFP10398 606 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 UQCRBP14927 111 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 GPX2P18283 190 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 LARS2Q15031 903 aaKnown RBP16.67■□□□□ 0.26
CDX1-202ENST00000616154 TMEM108Q6UXF1 575 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 UBE2J2Q8N2K1 259 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 BBS10Q8TAM1 723 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 SLC25A15Q9Y619 301 aa16.67■□□□□ 0.26
CDX1-202ENST00000616154 YLPM1P49750 1951 aaKnown RBP16.66■□□□□ 0.26
CDX1-202ENST00000616154 TMED7-TICAM2A0A0A6YYA0 188 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 ETS2P15036 469 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 PTAFRP25105 342 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 TACR3P29371 465 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 MMEL1Q495T6 779 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 RPS26P11Q5JNZ5 115 aaPredicted RBP16.66■□□□□ 0.26
CDX1-202ENST00000616154 C11orf71Q6IPW1 123 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 KLHL17Q6TDP4 642 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 DHDDSQ86SQ9 333 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 C10orf111Q8N326 155 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 DHRS9Q9BPW9 319 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 C1orf21Q9H246 121 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 TMEM38AQ9H6F2 299 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 ASB6Q9NWX5 421 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 TAS2R16Q9NYV7 291 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 MALT1Q9UDY8 824 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 TMED7Q9Y3B3 224 aa16.66■□□□□ 0.26
CDX1-202ENST00000616154 CIB4A0PJX0 185 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 E7EQL1 145 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 AIM2O14862 343 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 RRP9O43818 475 aaKnown RBP16.65■□□□□ 0.26
CDX1-202ENST00000616154 SSX4O60224 188 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 ATP5HO75947 161 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 TTKP33981 857 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 NTF4P34130 210 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 NFYCQ13952 458 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 HIPK1Q86Z02 1210 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 PIAS4Q8N2W9 510 aaPredicted RBP16.65■□□□□ 0.26
CDX1-202ENST00000616154 CLIP4Q8N3C7 705 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 OR52N5Q8NH56 324 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 MAL2Q969L2 176 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 SLC7A6OSQ96CW6 309 aaPredicted RBP16.65■□□□□ 0.26
CDX1-202ENST00000616154 LRRC58Q96CX6 371 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 ADAD1Q96M93 576 aaKnown RBP16.65■□□□□ 0.26
CDX1-202ENST00000616154 CGREF1Q99674 301 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 RHNO1Q9BSD3 238 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 RSPO3Q9BXY4 272 aaPredicted RBP16.65■□□□□ 0.26
CDX1-202ENST00000616154 OR11A1Q9GZK7 315 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 IKZF5Q9H5V7 419 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 YAE1D1Q9NRH1 226 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 CBLN4Q9NTU7 201 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 GID8Q9NWU2 228 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 TMEM181Q9P2C4 612 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 ZNF232Q9UNY5 417 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 CORO2BQ9UQ03 480 aa16.65■□□□□ 0.26
CDX1-202ENST00000616154 TMEM72A0PK05 275 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 MRPL33O75394 65 aaKnown RBP16.64■□□□□ 0.25
CDX1-202ENST00000616154 PTNP21246 168 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 CD40P25942 277 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 PRKAR1BP31321 381 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 NUDT2P50583 147 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 ZNF83P51522 516 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 SPOCK1Q08629 439 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 GABRA6Q16445 453 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 GCNT6Q5T4J0 391 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 WBP2NLQ6ICG8 309 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 OR7E24Q6IFN5 339 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 SLC22A25Q6T423 547 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 DDIT4LQ96D03 193 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 ANKRD27Q96NW4 1050 aa16.64■□□□□ 0.25
CDX1-202ENST00000616154 MUS81Q96NY9 551 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms