RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 MRPS18CQ9Y3D5 142 aaKnown RBP12.85□□□□□ -0.35
USP39-220ENST00000613444 LIPT2A6NK58 231 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 CLCA1A8K7I4 914 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 KDM4EB2RXH2 506 aaPredicted RBP12.84□□□□□ -0.35
USP39-220ENST00000613444 ARPC3O15145 178 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 EEF1B2P24534 225 aaKnown RBP12.84□□□□□ -0.35
USP39-220ENST00000613444 SGCBQ16585 318 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 MEDAGQ5VYS4 303 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 NANOGNBQ7Z5D8 188 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 ZNF540Q8NDQ6 660 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 OR5J2Q8NH18 312 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 SCMH1Q96GD3 660 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 Q96MT0 163 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 TEX12Q9BXU0 123 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 TMEM185BQ9H7F4 350 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 MRPL39Q9NYK5 338 aaKnown RBP12.84□□□□□ -0.35
USP39-220ENST00000613444 ERVK-18Q9QC07 812 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 BOKQ9UMX3 212 aaPredicted RBP12.84□□□□□ -0.35
USP39-220ENST00000613444 IER3IP1Q9Y5U9 82 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 URB1O60287 2271 aaKnown RBP12.84□□□□□ -0.35
USP39-220ENST00000613444 M0R082 166 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 MVKQ03426 396 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 MYBPHQ13203 477 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 ALG10Q5BKT4 473 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 SLC25A25Q6KCM7 469 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 AHSA2Q719I0 299 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 SPARTQ8N0X7 666 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 ANKK1Q8NFD2 765 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 ZNF417Q8TAU3 575 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 SLC25A43Q8WUT9 341 aaPredicted RBP12.84□□□□□ -0.35
USP39-220ENST00000613444 ERMAPQ96PL5 475 aaPredicted RBP12.84□□□□□ -0.35
USP39-220ENST00000613444 ZNF587Q96SQ5 575 aaPredicted RBP12.84□□□□□ -0.35
USP39-220ENST00000613444 KATNB1Q9BVA0 655 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 TAPBPLQ9BX59 468 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 OR2B2Q9GZK3 357 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 FN3KQ9H479 309 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 KLHL1Q9NR64 748 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 DKK4Q9UBT3 224 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 CSAG2Q9Y5P2 127 aa12.84□□□□□ -0.35
USP39-220ENST00000613444 ANKRD11Q6UB99 2663 aaPredicted RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 DPPA5A6NC42 116 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 A6NHS1 94 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 PLPP3O14495 311 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 OPN1LWP04000 364 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 HIST1H2ABP04908 130 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 F13BP05160 661 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 CD14P08571 375 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 ADRA2AP08913 450 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 TFPIP10646 304 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 APEHP13798 732 aaKnown RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 FKBP2P26885 142 aaKnown RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 IDUAP35475 653 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 RPL4P36578 427 aaKnown RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 CLK1P49759 484 aaKnown RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 TNFSF10P50591 281 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 ERVK-25P63136 954 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 OR7A5Q15622 319 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.83□□□□□ -0.366e-7■□□□□ 9.1
USP39-220ENST00000613444 RAET1LQ5VY80 246 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 ARHGAP11AQ6P4F7 1023 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 HIST3H2AQ7L7L0 130 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 GALNTL5Q7Z4T8 443 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 YRDCQ86U90 279 aaKnown RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 FAM83FQ8NEG4 500 aaPredicted RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 BBS1Q8NFJ9 593 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 IPCEF1Q8WWN9 437 aaPredicted RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 HIST1H2ACQ93077 130 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 PTP4A1Q93096 173 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 DDOQ99489 341 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 HCAR1Q9BXC0 346 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 ZNF703Q9H7S9 590 aaPredicted RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 BATF3Q9NR55 127 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 SPIN1Q9Y657 262 aaPredicted RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 ZNF407Q9C0G0 2248 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 DNAJC13O75165 2243 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 FAM183AA6NL82 134 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 PRODHO43272 600 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 GLSO94925 669 aaPredicted RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 DBTP11182 482 aaKnown RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 HIST1H1CP16403 213 aaKnown RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 ALDH3B2P48448 385 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 ARG2P78540 354 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 ZNF91Q05481 1191 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 XAF1Q6GPH4 301 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 CPOQ8IVL8 374 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 SCAIQ8N9R8 606 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 PLEKHA8Q96JA3 519 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 PIGQQ9BRB3 760 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 KLF13Q9Y2Y9 288 aaPredicted RBP12.83□□□□□ -0.36
USP39-220ENST00000613444 CORINQ9Y5Q5 1042 aa12.83□□□□□ -0.36
USP39-220ENST00000613444 SPENQ96T58 3664 aaKnown RBP12.82□□□□□ -0.36
USP39-220ENST00000613444 A0A1W2PNR3 127 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 MS4A18H0YCH9 400 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 IDH3BO43837 385 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 TXNDC12O95881 172 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 PCMT1P22061 227 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 C21orf33P30042 268 aaPredicted RBP12.82□□□□□ -0.36
USP39-220ENST00000613444 RFC3P40938 356 aa12.82□□□□□ -0.36
USP39-220ENST00000613444 RPL5P46777 297 aaKnown RBP12.82□□□□□ -0.36
USP39-220ENST00000613444 NR1H2P55055 460 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms