RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 TRAM1Q15629 374 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.4□□□□□ -0.42
NEK3-205ENST00000610828 MZT2AQ6P582 158 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 CNIH2Q6PI25 160 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 SPATC1Q76KD6 591 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 NRARPQ7Z6K4 114 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 NR2C2APQ86WQ0 139 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 LSM14AQ8ND56 463 aaKnown RBP12.4□□□□□ -0.42
NEK3-205ENST00000610828 PLPP5Q8NEB5 264 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 ABHD4Q8TB40 342 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 SETD6Q8TBK2 473 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 LIPHQ8WWY8 451 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 ADAM19Q9H013 955 aa12.4□□□□□ -0.42
NEK3-205ENST00000610828 ASCC3Q8N3C0 2202 aaKnown RBP12.4□□□□□ -0.42
NEK3-205ENST00000610828 A0A1W2PQM1 296 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 OR6C76A6NM76 312 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 SIGLEC6O43699 453 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 TIAF1O95411 115 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 CSF3P09919 207 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 CFL1P23528 166 aaKnown RBP12.4□□□□□ -0.43
NEK3-205ENST00000610828 PNLIPRP2P54317 469 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 ACY1Q03154 408 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 SCN1BQ07699 218 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 CBX3Q13185 183 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 SLC35D3Q5M8T2 416 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 IDNKQ5T6J7 187 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 DMKNQ6E0U4 476 aaPredicted RBP12.4□□□□□ -0.43
NEK3-205ENST00000610828 NANOGNBQ7Z5D8 188 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 CELF2-AS1Q8N7Q2 184 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 GDPD1Q8N9F7 314 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 OR13C5Q8NGS8 318 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 TAAR8Q969N4 342 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 PELI1Q96FA3 418 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 GUCD1Q96NT3 240 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 TSSK2Q96PF2 358 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 MESP1Q9BRJ9 268 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 NMNAT2Q9BZQ4 307 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 CCDC86Q9H6F5 360 aaKnown RBP12.4□□□□□ -0.43
NEK3-205ENST00000610828 SACM1LQ9NTJ5 587 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 GNG8Q9UK08 70 aa12.4□□□□□ -0.43
NEK3-205ENST00000610828 A0A1B0GTQ1 180 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 A0A1W2PQD3 144 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 PNLIPP16233 465 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 MYL9P24844 172 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 GRPRP30550 384 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 SDHAP31040 664 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 NRG3P56975 720 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 CCL7P80098 99 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 RPL18Q07020 188 aaKnown RBP12.39□□□□□ -0.43
NEK3-205ENST00000610828 PMS2CLQ68D20 193 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 FAM122BQ7Z309 247 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 KANSL1Q7Z3B3 1105 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 SAP25Q8TEE9 199 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 TGIF2Q9GZN2 237 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 ST6GALNAC2Q9UJ37 374 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 COPS3Q9UNS2 423 aa12.39□□□□□ -0.43
NEK3-205ENST00000610828 LY6G6EA0A0G2JKS1 128 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 IDSB3KWA1 339 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 CPNE3O75131 537 aaKnown RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 SCRG1O75711 98 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 GLCEO94923 617 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 HIST1H2ABP04908 130 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 HEXBP07686 556 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 PGCP20142 388 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 APEX1P27695 318 aaKnown RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 UQCRC1P31930 480 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 EVI2BP34910 448 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 EIF2B2P49770 351 aaKnown RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 GBX2P52951 348 aaPredicted RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 RNF4P78317 190 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 IL18Q14116 193 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 HLA-BQ31612 363 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 CDONQ4KMG0 1287 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 ACSM3Q53FZ2 586 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 C16orf47Q6ZP98 133 aaPredicted RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 HIST3H2AQ7L7L0 130 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 RABEPKQ7Z6M1 372 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 SYS1Q8N2H4 156 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 MS4A15Q8N5U1 240 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 ZNF441Q8N8Z8 693 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 LRRC75AQ8NAA5 344 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 ZBTB8BQ8NAP8 495 aaPredicted RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 THAP3Q8WTV1 239 aaPredicted RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 PIGKQ92643 395 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 HIST1H2ACQ93077 130 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 SMAD5Q99717 465 aaKnown RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 ALG12Q9BV10 488 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 C12orf10Q9HB07 376 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 ACOXLQ9NUZ1 547 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 GRHPRQ9UBQ7 328 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 PCDHGB2Q9Y5G2 931 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 U3KQA8 63 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 EIF4E2O60573 245 aaKnown RBP12.38□□□□□ -0.43
NEK3-205ENST00000610828 SLC25A12O75746 678 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 SIRPAP78324 504 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 CBFBQ13951 182 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 NKAIN1Q4KMZ8 207 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 PWWP2BQ6NUJ5 590 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 THAP4Q8WY91 577 aa12.38□□□□□ -0.43
NEK3-205ENST00000610828 KIAA1143Q96AT1 154 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms