RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 PHF1O43189 567 aaPredicted RBP11.47□□□□□ -0.57
RPS28-204ENST00000602140 SLC22A3O75751 556 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 VAMP5O95183 116 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 IDO1P14902 403 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 ZNF16P17020 682 aaPredicted RBP11.47□□□□□ -0.57
RPS28-204ENST00000602140 WDR4P57081 412 aaKnown RBP11.47□□□□□ -0.57
RPS28-204ENST00000602140 UBE2NP61088 152 aaKnown RBP11.47□□□□□ -0.57
RPS28-204ENST00000602140 LSM11P83369 360 aaKnown RBP eCLIP11.47□□□□□ -0.57
RPS28-204ENST00000602140 GTDC1Q4AE62 458 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 PDCD4Q53EL6 469 aaKnown RBP11.47□□□□□ -0.57
RPS28-204ENST00000602140 RNF220Q5VTB9 566 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 PRAMEF8Q5VWM4 474 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 PRAMEF7Q5VXH5 474 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 NIPAL3Q6P499 406 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 SERPINA11Q86U17 422 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 SORCS2Q96PQ0 1159 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 ALKBH3Q96Q83 286 aaPredicted RBP11.47□□□□□ -0.57
RPS28-204ENST00000602140 SLC38A2Q96QD8 506 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 KCNS3Q9BQ31 491 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 THAP1Q9NVV9 213 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 TMEM160Q9NX00 188 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 CHST2Q9Y4C5 530 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 FKBP7Q9Y680 259 aa11.47□□□□□ -0.57
RPS28-204ENST00000602140 A0A096LPE4 126 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 A0A0G2JPF8 293 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 A0A1W2PPZ6 126 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 HNRNPCL2B2RXH8 293 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 HNRNPCL3B7ZW38 293 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 SLCO1B7G3V0H7 640 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 NR5A2O00482 541 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 HNRNPCL1O60812 293 aaKnown RBP11.46□□□□□ -0.57
RPS28-204ENST00000602140 NPIPB7O75200 414 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 SNNO75324 88 aaPredicted RBP11.46□□□□□ -0.57
RPS28-204ENST00000602140 AHSA1O95433 338 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 CRYAAP02489 173 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 ZCCHC18P0CG32 403 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 HNRNPCL4P0DMR1 293 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 SERPINF1P36955 418 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 PDLIM4P50479 330 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 SNRPD2P62316 118 aaKnown RBP11.46□□□□□ -0.57
RPS28-204ENST00000602140 TUBA1BP68363 451 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 TUBA4AP68366 448 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 GGTLC2Q14390 218 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 ZSWIM7Q19AV6 140 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 SLC9B1Q4ZJI4 515 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 ATG16L1Q676U5 607 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 TUBA1AQ71U36 451 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 LINGO2Q7L985 606 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 EPHX4Q8IUS5 362 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 KDM8Q8N371 416 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 MGARPQ8TDB4 240 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 BCL2L2Q92843 193 aaPredicted RBP11.46□□□□□ -0.57
RPS28-204ENST00000602140 VPS33AQ96AX1 596 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 C3orf49Q96BT1 292 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 SLC25A36Q96CQ1 311 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 TMEM19Q96HH6 336 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 ITCHQ96J02 903 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 VRK1Q99986 396 aaPredicted RBP11.46□□□□□ -0.57
RPS28-204ENST00000602140 KATNB1Q9BVA0 655 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 SPATA9Q9BWV2 254 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 SHARPINQ9H0F6 387 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 ARMC7Q9H6L4 198 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 RMND5AQ9H871 391 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 CACYBPQ9HB71 228 aaKnown RBP11.46□□□□□ -0.57
RPS28-204ENST00000602140 CA10Q9NS85 328 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 LPAR3Q9UBY5 353 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 RASD1Q9Y272 281 aa11.46□□□□□ -0.57
RPS28-204ENST00000602140 A0A096LPI6 279 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 TMEM120BA0PK00 339 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 TMEM247A6NEH6 219 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 OR6C65A6NJZ3 312 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 VWC2LB2RUY7 222 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 TMEM229AB2RXF0 380 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 LMX1BO60663 402 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 UPK3AO75631 287 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 PNMTP11086 282 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 PAX7P23759 505 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 NR4A2P43354 598 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 RPS5P46782 204 aaKnown RBP11.45□□□□□ -0.58
RPS28-204ENST00000602140 GZMKP49863 264 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 HOXC5Q00444 222 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 NAAAQ02083 359 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 CARTPTQ16568 116 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 ZNF311Q5JNZ3 666 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 C6orf10Q5SRN2 563 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 ANKRD16Q6P6B7 361 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 VHLLQ6RSH7 139 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 SLC46A3Q7Z3Q1 461 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 CROCCP2Q86T23 111 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 ARIH2OSQ8N7S6 290 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 ANKS4BQ8N8V4 417 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 MFSD8Q8NHS3 518 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 STK35Q8TDR2 534 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 MAELQ96JY0 434 aaKnown RBP11.45□□□□□ -0.58
RPS28-204ENST00000602140 FOXN4Q96NZ1 517 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 PIMREGQ9BSJ6 248 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 LINC00470Q9BZP3 86 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 THUMPD1Q9NXG2 353 aaKnown RBP11.45□□□□□ -0.58
RPS28-204ENST00000602140 ZIM2Q9NZV7 527 aa11.45□□□□□ -0.58
RPS28-204ENST00000602140 IFT52Q9Y366 437 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms