RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CASKO14936 926 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 SHOX2O60902 331 aaPredicted RBP14.31□□□□□ -0.12
LSM4-206ENST00000600289 AKR7A3O95154 331 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 LYPD3O95274 346 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 HRGP04196 525 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 MFSD13AQ14CX5 517 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 ENTPD8Q5MY95 495 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 CXorf67Q86X51 503 aaPredicted RBP14.31□□□□□ -0.12
LSM4-206ENST00000600289 ADPRHL1Q8NDY3 354 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 OR9K2Q8NGE7 335 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 PROX1Q92786 737 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 APH1AQ96BI3 265 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 LRRC37BQ96QE4 947 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 EPYCQ99645 322 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 MED18Q9BUE0 208 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 ZNF426Q9BUY5 554 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 POLDIP3Q9BY77 421 aaKnown RBP14.31□□□□□ -0.12
LSM4-206ENST00000600289 CLEC4MQ9H2X3 399 aaPredicted RBP14.31□□□□□ -0.12
LSM4-206ENST00000600289 ALG2Q9H553 416 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 PARPBPQ9NWS1 579 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 MALT1Q9UDY8 824 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 PRSS50Q9UI38 385 aa14.31□□□□□ -0.12
LSM4-206ENST00000600289 TRAPPC13A5PLN9 417 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 MRPL33O75394 65 aaKnown RBP14.3□□□□□ -0.12
LSM4-206ENST00000600289 FAM107AO95990 144 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 EDNRAP25101 427 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 NTF4P34130 210 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 RPS5P46782 204 aaKnown RBP14.3□□□□□ -0.12
LSM4-206ENST00000600289 GSK3BP49841 420 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 PSME3P61289 254 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 SELENOWP63302 87 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 ITGADQ13349 1161 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 CYBRD1Q53TN4 286 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 FBXW9Q5XUX1 488 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 SSX8Q7RTT4 187 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 LSRQ86X29 649 aaPredicted RBP14.3□□□□□ -0.12
LSM4-206ENST00000600289 CARM1Q86X55 608 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 RBM45Q8IUH3 476 aaKnown RBP14.3□□□□□ -0.12
LSM4-206ENST00000600289 ZNF100Q8IYN0 542 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 VANGL1Q8TAA9 524 aaPredicted RBP14.3□□□□□ -0.12
LSM4-206ENST00000600289 ADAMTS16Q8TE57 1224 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 TAAR8Q969N4 342 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 SLC41A3Q96GZ6 507 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 MPP4Q96JB8 637 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 CCT8L2Q96SF2 557 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 ACTR6Q9GZN1 396 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 SPAG4Q9NPE6 437 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 DLL4Q9NR61 685 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 ADPRHL2Q9NX46 363 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 B3GALT5Q9Y2C3 310 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 CORINQ9Y5Q5 1042 aa14.3□□□□□ -0.12
LSM4-206ENST00000600289 FBN1P35555 2871 aaKnown RBP14.29□□□□□ -0.12
LSM4-206ENST00000600289 JMJD1CQ15652 2540 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 LOC102725191A0A1B0GVB3 256 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 CPSF4LA6NMK7 179 aaKnown RBP14.29□□□□□ -0.12
LSM4-206ENST00000600289 DEFB108AA8MXU0 73 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 ADAP00813 363 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 THY1P04216 161 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 THBDP07204 575 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 GTF2E2P29084 291 aaKnown RBP14.29□□□□□ -0.12
LSM4-206ENST00000600289 TMEM225Q6GV28 225 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 C22orf34Q6ZV56 151 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 TSPYL5Q86VY4 417 aaPredicted RBP14.29□□□□□ -0.12
LSM4-206ENST00000600289 CDC20BQ86Y33 519 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 ZIC4Q8N9L1 334 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 SCAIQ8N9R8 606 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 KISS1RQ969F8 398 aaPredicted RBP14.29□□□□□ -0.12
LSM4-206ENST00000600289 ZNF775Q96BV0 537 aaPredicted RBP14.29□□□□□ -0.12
LSM4-206ENST00000600289 SLC19A3Q9BZV2 496 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 CXXC4Q9H2H0 198 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 SH3GLB1Q9Y371 365 aa14.29□□□□□ -0.12
LSM4-206ENST00000600289 COL6A5A8TX70 2615 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 PDLIM1O00151 329 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 CXCR6O00574 342 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 SIAH2O43255 324 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 OR5F1O95221 314 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 MT-ATP6P00846 226 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 BGLAPP02818 100 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 THRBP10828 461 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 ABCA4P78363 2273 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 KRT72Q14CN4 511 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 FXNQ16595 210 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 LRRC23Q53EV4 343 aaPredicted RBP14.28□□□□□ -0.12
LSM4-206ENST00000600289 GKAP1Q5VSY0 366 aaPredicted RBP14.28□□□□□ -0.12
LSM4-206ENST00000600289 CASP12Q6UXS9 341 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 CREB3L2Q70SY1 520 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 S100PBPQ96BU1 408 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 GMPR2Q9P2T1 348 aaKnown RBP14.28□□□□□ -0.12
LSM4-206ENST00000600289 TAGLN3Q9UI15 199 aa14.28□□□□□ -0.12
LSM4-206ENST00000600289 FN1P02751 2386 aaKnown RBP14.27□□□□□ -0.12
LSM4-206ENST00000600289 OR6C65A6NJZ3 312 aa14.27□□□□□ -0.13
LSM4-206ENST00000600289 M0R082 166 aa14.27□□□□□ -0.13
LSM4-206ENST00000600289 IGF2P01344 180 aa14.27□□□□□ -0.13
LSM4-206ENST00000600289 IGHV1-2P23083 117 aa14.27□□□□□ -0.13
LSM4-206ENST00000600289 IL32P24001 234 aa14.27□□□□□ -0.13
LSM4-206ENST00000600289 LOXP28300 417 aaPredicted RBP14.27□□□□□ -0.13
LSM4-206ENST00000600289 GRPRP30550 384 aa14.27□□□□□ -0.13
LSM4-206ENST00000600289 RBM34P42696 430 aaKnown RBP14.27□□□□□ -0.13
LSM4-206ENST00000600289 LTBQ06643 244 aa14.27□□□□□ -0.13
LSM4-206ENST00000600289 C1QTNF12Q5T7M4 302 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms