RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PMF1-BGLAPU3KQ54 211 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 FN1P02751 2386 aaKnown RBP8.58□□□□□ -1.04
VRK3-216ENST00000599342 ROS1P08922 2347 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 ABCA2Q9BZC7 2435 aa8.58□□□□□ -1.04
VRK3-216ENST00000599342 NAV3Q8IVL0 2385 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 NIPBLQ6KC79 2804 aaeCLIP8.57□□□□□ -1.04
VRK3-216ENST00000599342 TMEM229AB2RXF0 380 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 ATP6V1G2-DDX39BF2Z307 99 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 NR5A2O00482 541 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 CSF3P09919 207 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 NUDT7P0C024 238 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 ETS2P15036 469 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 SLC25A16P16260 332 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 ZNF43P17038 809 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 PPIBP23284 216 aaKnown RBP8.57□□□□□ -1.04
VRK3-216ENST00000599342 RPS5P46782 204 aaKnown RBP8.57□□□□□ -1.04
VRK3-216ENST00000599342 SELENOPP49908 381 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 NCALDP61601 193 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 TBRG1Q3YBR2 411 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 HIKESHIQ53FT3 197 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 HMBOX1Q6NT76 420 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 EPGNQ6UW88 154 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 CREB3L2Q70SY1 520 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 ZNF525Q8N782 197 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 OR1K1Q8NGR3 316 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 MFSD8Q8NHS3 518 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 LRRC8CQ8TDW0 803 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 FAM168AQ92567 244 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 HTRA1Q92743 480 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 MAL2Q969L2 176 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 C7orf26Q96N11 449 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 ZNF317Q96PQ6 595 aaPredicted RBP8.57□□□□□ -1.04
VRK3-216ENST00000599342 SPATA5L1Q9BVQ7 753 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 PAIP1Q9H074 479 aaKnown RBP8.57□□□□□ -1.04
VRK3-216ENST00000599342 BCL2L10Q9HD36 194 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 ADAM21Q9UKJ8 722 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 MOKQ9UQ07 419 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 CHST2Q9Y4C5 530 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 FKBP7Q9Y680 259 aa8.57□□□□□ -1.04
VRK3-216ENST00000599342 HIVEP2P31629 2446 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 A8MV72 311 aaPredicted RBP8.56□□□□□ -1.04
VRK3-216ENST00000599342 AKAP8O43823 692 aaKnown RBP8.56□□□□□ -1.04
VRK3-216ENST00000599342 NPIPB7O75200 414 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 TGDSO95455 350 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 LGI1O95970 557 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 IFNA2P01563 188 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 CRYAAP02489 173 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 PNMTP11086 282 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 BMP2P12643 396 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 PRKAR1BP31321 381 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 P2RY4P51582 365 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 SH3BGRP55822 239 aaPredicted RBP8.56□□□□□ -1.04
VRK3-216ENST00000599342 CLDN17P56750 224 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 SNRPD2P62316 118 aaKnown RBP8.56□□□□□ -1.04
VRK3-216ENST00000599342 HOXC5Q00444 222 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 IL1RL1Q01638 556 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 LGALS3BPQ08380 585 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 C1DQ13901 141 aaKnown RBP8.56□□□□□ -1.04
VRK3-216ENST00000599342 BEND6Q5SZJ8 279 aaPredicted RBP8.56□□□□□ -1.04
VRK3-216ENST00000599342 GCNT6Q5T4J0 391 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 FAM69AQ5T7M9 428 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 C5orf46Q6UWT4 87 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 KRT73Q86Y46 540 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 OR10H5Q8NGA6 315 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 NFKBIDQ8NI38 313 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 RNF217Q8TC41 542 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 SLC38A4Q969I6 547 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 SPDL1Q96EA4 605 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 FBXO17Q96EF6 278 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 BOD1Q96IK1 185 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 SLC38A2Q96QD8 506 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 MDFIQ99750 246 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 KATNB1Q9BVA0 655 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 LINC00470Q9BZP3 86 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 C12orf10Q9HB07 376 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 MOV10Q9HCE1 1003 aaKnown RBP8.56□□□□□ -1.04
VRK3-216ENST00000599342 SELENONQ9NZV5 590 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 CCDC167Q9P0B6 97 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 SLC13A4Q9UKG4 626 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 CORO2BQ9UQ03 480 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 RCE1Q9Y256 329 aa8.56□□□□□ -1.04
VRK3-216ENST00000599342 A0A096LPE4 126 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 ARPC4-TTLL3A0A0A6YYG9 625 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 IGHV1-18A0A0C4DH31 117 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 A0A1W2PPZ6 126 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 FTCDNL1E5RQL4 147 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 AIM2O14862 343 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 OR2T1O43869 369 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 SLC43A1O75387 559 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 UPK3AO75631 287 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 ARAFP10398 606 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 MRPL19P49406 292 aaKnown RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 EFNA4P52798 201 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 CDK6Q00534 326 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 ROR2Q01974 943 aaKnown RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 EGR4Q05215 589 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 LOXL1Q08397 574 aaPredicted RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 TMEM249Q2WGJ8 235 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 CHRFAM7AQ494W8 412 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 ALG10BQ5I7T1 473 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms