RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 STK11Q15831 433 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 ZNF672Q499Z4 452 aaPredicted RBP11.03□□□□□ -0.64
UPF1-203ENST00000594504 SYT14P1Q58G82 188 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 ADGRG3Q86Y34 549 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 CADM2Q8N3J6 435 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 SMYD1Q8NB12 490 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 SLC26A7Q8TE54 656 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 RASSF5Q8WWW0 418 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 GTPBP3Q969Y2 492 aaKnown RBP11.03□□□□□ -0.64
UPF1-203ENST00000594504 TRMT61AQ96FX7 289 aaKnown RBP11.03□□□□□ -0.64
UPF1-203ENST00000594504 REG4Q9BYZ8 158 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 ADAM19Q9H013 955 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 ESRP2Q9H6T0 727 aaKnown RBP11.03□□□□□ -0.64
UPF1-203ENST00000594504 BCO1Q9HAY6 547 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 TAGLN3Q9UI15 199 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 OSGIN1Q9UJX0 560 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 TMED7Q9Y3B3 224 aa11.03□□□□□ -0.64
UPF1-203ENST00000594504 ELOVL7A1L3X0 281 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 NME4O00746 187 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 ZNF208O43345 1280 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 CYTIPO60759 359 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 TMCC2O75069 709 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 CRLF1O75462 422 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 IFNA14P01570 189 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 IGHV3-9P01782 118 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 OPN1SWP03999 348 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 TFPIP10646 304 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 IDUAP35475 653 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 OR3A2P47893 321 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 RGS8P57771 180 aaPredicted RBP11.02□□□□□ -0.65
UPF1-203ENST00000594504 PSME3P61289 254 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 NCALDP61601 193 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 LIPEQ05469 1076 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 KRT72Q14CN4 511 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 DUSP7Q16829 419 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 GLIPR1L2Q4G1C9 344 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 COMTD1Q86VU5 262 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 MICU2Q8IYU8 434 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 SLC43A2Q8N370 569 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 FITM2Q8N6M3 262 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 LSMEM1Q8N8F7 131 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 TAMM41Q96BW9 452 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 DDIT4LQ96D03 193 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 TRIM2Q9C040 744 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 SLCO5A1Q9H2Y9 848 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 GP6Q9HCN6 339 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 SPAG4Q9NPE6 437 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 ARL8BQ9NVJ2 186 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 CISD1Q9NZ45 108 aaKnown RBP11.02□□□□□ -0.65
UPF1-203ENST00000594504 NPAP1Q9NZP6 1156 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 KLHL9Q9P2J3 617 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 ABCD2Q9UBJ2 740 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 TESQ9UGI8 421 aaKnown RBP11.02□□□□□ -0.65
UPF1-203ENST00000594504 USP22Q9UPT9 525 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 HDGFL3Q9Y3E1 203 aa11.02□□□□□ -0.65
UPF1-203ENST00000594504 CHD3Q12873 2000 aaKnown RBP11.01□□□□□ -0.65
UPF1-203ENST00000594504 A0A1W2PR80 420 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 SHISA9B4DS77 424 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 LGI1O95970 557 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 IGHV4-39P01824 125 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 CD247P20963 164 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 CXCR1P25024 350 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 NTF4P34130 210 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 DIO1P49895 249 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 MNAT1P51948 309 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 CRYBA2P53672 197 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 CSNK2A1P68400 391 aaPredicted RBP11.01□□□□□ -0.65
UPF1-203ENST00000594504 HOXC5Q00444 222 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 P2RY6Q15077 328 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 PPA1Q15181 289 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 NRF1Q16656 503 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 TMPPEQ6ZT21 453 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 Q6ZT83 130 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 RANBP3LQ86VV4 465 aaPredicted RBP11.01□□□□□ -0.65
UPF1-203ENST00000594504 GPR32P1Q8NGA4 272 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 BCAS4Q8TDM0 211 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 C3orf49Q96BT1 292 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 ARHGDIGQ99819 225 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 TRAF4Q9BUZ4 470 aaPredicted RBP11.01□□□□□ -0.65
UPF1-203ENST00000594504 POTEKPQ9BYX7 375 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 ALG2Q9H553 416 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 NGBQ9NPG2 151 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 NDE1Q9NXR1 346 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 RPS6KB2Q9UBS0 482 aa11.01□□□□□ -0.65
UPF1-203ENST00000594504 TMEM72A0PK05 275 aa11□□□□□ -0.65
UPF1-203ENST00000594504 SULT2B1O00204 365 aa11□□□□□ -0.65
UPF1-203ENST00000594504 DNPH1O43598 174 aa11□□□□□ -0.65
UPF1-203ENST00000594504 FMO6PO60774 539 aa11□□□□□ -0.65
UPF1-203ENST00000594504 PMS2P2O95744 297 aa11□□□□□ -0.65
UPF1-203ENST00000594504 FESP07332 822 aa11□□□□□ -0.65
UPF1-203ENST00000594504 CCNA2P20248 432 aa11□□□□□ -0.65
UPF1-203ENST00000594504 HTR2AP28223 471 aa11□□□□□ -0.65
UPF1-203ENST00000594504 KDELR2P33947 212 aa11□□□□□ -0.65
UPF1-203ENST00000594504 GSK3BP49841 420 aa11□□□□□ -0.65
UPF1-203ENST00000594504 FOXG1P55316 489 aaPredicted RBP11□□□□□ -0.65
UPF1-203ENST00000594504 LRRC23Q53EV4 343 aaPredicted RBP11□□□□□ -0.65
UPF1-203ENST00000594504 C6orf89Q6UWU4 347 aa11□□□□□ -0.65
UPF1-203ENST00000594504 ZNF100Q8IYN0 542 aa11□□□□□ -0.65
UPF1-203ENST00000594504 PGAM4Q8N0Y7 254 aa11□□□□□ -0.65
UPF1-203ENST00000594504 OR52E4Q8NGH9 312 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms