RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 C6orf141Q5SZD1 244 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 GDF7Q7Z4P5 450 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 LHFPL3Q86UP9 236 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 LILRA2Q8N149 483 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 OR13C2Q8NGS9 318 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 SPRYD4Q8WW59 207 aaPredicted RBP9.03□□□□□ -0.96
LIG3-216ENST00000593099 KCTD7Q96MP8 289 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 SAP130Q9H0E3 1048 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 ABCD2Q9UBJ2 740 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 FAM186AA6NE01 2351 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 TEX51A0A1B0GUA7 166 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 LOC102725191A0A1B0GVB3 256 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 A0A1W2PRQ8 180 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 FAM171A2A8MVW0 826 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 ZNF208O43345 1280 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 RFC3P40938 356 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 RAB5BP61020 215 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 MELKQ14680 651 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 GFRALQ6UXV0 394 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 PTRH1Q86Y79 214 aaKnown RBP9.02□□□□□ -0.96
LIG3-216ENST00000593099 HTRA1Q92743 480 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 NKD1Q969G9 470 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 TMEM203Q969S6 136 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 ZNF223Q9UK11 482 aaPredicted RBP9.02□□□□□ -0.96
LIG3-216ENST00000593099 ST14Q9Y5Y6 855 aa9.02□□□□□ -0.96
LIG3-216ENST00000593099 H3BSH0 61 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 NKX2-2O95096 273 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 PTHP01270 115 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 FGF5P12034 268 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 STOMP27105 288 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 AQP2P41181 271 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 ID4P47928 161 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 CAPZA1P52907 286 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 PGGHGQ32M88 737 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 PYDC2Q56P42 97 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 C9orf135Q5VTT2 229 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 OR2L13Q8N349 312 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 CNIH3Q8TBE1 160 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 M1APQ8TC57 530 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 MRGPRX4Q96LA9 322 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 SLC25A37Q9NYZ2 338 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 TRBV4-1A0A0J9YWV2 114 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 LOC110117498-PIK3R3F6TDL0 507 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 IFNA6P05013 189 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 CSRP1P21291 193 aaKnown RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 ACP1P24666 158 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 CLDN6P56747 220 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 TSTQ16762 297 aaKnown RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 FAM76BQ5HYJ3 339 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 AADACL4Q5VUY2 407 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 TMEM236Q5W0B7 351 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 PGM2L1Q6PCE3 622 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 H1FNTQ75WM6 255 aaPredicted RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 ZBTB44Q8NCP5 570 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 OR5M1Q8NGP8 315 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 ZMYND19Q96E35 227 aaPredicted RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 KATNB1Q9BVA0 655 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 TMED9Q9BVK6 235 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 SIDT1Q9NXL6 827 aaKnown RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 GMPR2Q9P2T1 348 aaKnown RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 TMEM184BQ9Y519 407 aaPredicted RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 CACNA1IQ9P0X4 2223 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 DOCK6Q96HP0 2047 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 SMAD9O15198 467 aaKnown RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 XPNPEP2O43895 674 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 CELP19835 753 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 ABCD3P28288 659 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 SOX2P48431 317 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 PPP2R2BQ00005 443 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 MRGPREQ86SM8 312 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 MAFIPQ8WZ33 124 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 LIN37Q96GY3 246 aaPredicted RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 TNFRSF13CQ96RJ3 184 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 INTS14Q96SY0 518 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 RDH8Q9NYR8 311 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 PTTG2Q9NZH5 202 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 LUZP4Q9P127 313 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 C14orf166Q9Y224 244 aaKnown RBP9.02□□□□□ -0.97
LIG3-216ENST00000593099 PCDHGB6Q9Y5F9 930 aa9.02□□□□□ -0.97
LIG3-216ENST00000593099 HYAL3O43820 417 aaPredicted RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 CYC1P08574 325 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 NR4A1P22736 598 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 CSF2RBP32927 897 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 DUSP7Q16829 419 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 ADPRMQ3LIE5 342 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 TIGD4Q8IY51 512 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 HS3ST5Q8IZT8 346 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 APH1AQ96BI3 265 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 ZNF71Q9NQZ8 489 aaPredicted RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 GLS2Q9UI32 602 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 GPR160Q9UJ42 338 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 CNOT11Q9UKZ1 510 aaKnown RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 ZNF587BE7ETH6 402 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 TSTD3H0UI37 97 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 H7C1Q1 480 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 LINC01387J3KSC0 135 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 ERGP11308 486 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 RBM34P42696 430 aaKnown RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 GIPRP48546 466 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 CAMK2DQ13557 499 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms