RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SMAD7O15105 426 aaKnown RBP12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 CRLF1O75462 422 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 PDE5AO76074 875 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 IGHV3-9P01782 118 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 CSF3P09919 207 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 PNMTP11086 282 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 APOBEC3AP31941 199 aaPredicted RBP12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 ZNF311Q5JNZ3 666 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 C6orf10Q5SRN2 563 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 FAM91A1Q658Y4 838 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 ALKBH2Q6NS38 261 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 DHRS4L2Q6PKH6 230 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 CREB3L2Q70SY1 520 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 Q71RC1 249 aaPredicted RBP12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 AAED1Q7RTV5 226 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 CCDC36Q8IYA8 594 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 CLIP4Q8N3C7 705 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 OR52E4Q8NGH9 312 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 OR52N5Q8NH56 324 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 MGARPQ8TDB4 240 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 DNAJA4Q8WW22 397 aaPredicted RBP12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 VPS33AQ96AX1 596 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 SPATA5L1Q9BVQ7 753 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 SLC52A3Q9NQ40 469 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 B3GALT5Q9Y2C3 310 aa12.7□□□□□ -0.38
SMARCE1-216ENST00000580419 TRBV5-3A0A0A0MS03 114 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 PRORSD1PA6NEY8 169 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 POLR3GO15318 223 aaPredicted RBP12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 CD5LO43866 347 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 AKR7A3O95154 331 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 AHSA1O95433 338 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 GKN3PP0CG01 181 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 ARAFP10398 606 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 GPX2P18283 190 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 CDKN1AP38936 164 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 CHRNB3Q05901 458 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 DMTNQ08495 405 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 OR7A5Q15622 319 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 SWT1Q5T5J6 900 aaKnown RBP12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 FAM69AQ5T7M9 428 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 REEP3Q6NUK4 255 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 KLHL24Q6TFL4 600 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 HMGN2P46Q86SG4 172 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 KRT73Q86Y46 540 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 OR9I1Q8NGQ6 314 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 TSPEARQ8WU66 669 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 RHNO1Q9BSD3 238 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 KATNB1Q9BVA0 655 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 RABEP2Q9H5N1 569 aa12.69□□□□□ -0.38
SMARCE1-216ENST00000580419 A0A096LNT2 108 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 RNF223E7ERA6 249 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 ZNF587BE7ETH6 402 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 ZNF432O94892 652 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 PRG2P13727 222 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 SLC25A16P16260 332 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 NCF2P19878 526 aaPredicted RBP12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 CCNA2P20248 432 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 ACVR1BP36896 505 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 ZNF83P51522 516 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 EGR4Q05215 589 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 LOXL1Q08397 574 aaPredicted RBP12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 SERPINA11Q86U17 422 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 PRIMA1Q86XR5 153 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 EPHX4Q8IUS5 362 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 FUNDC1Q8IVP5 155 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 CADM2Q8N3J6 435 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 LRRC8CQ8TDW0 803 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 PROX1Q92786 737 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 SPDL1Q96EA4 605 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 AURKBQ96GD4 344 aaPredicted RBP12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 OXGR1Q96P68 337 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 ZNF385AQ96PM9 386 aaKnown RBP12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 PTDSS2Q9BVG9 487 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 TMEM160Q9NX00 188 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 SLC25A37Q9NYZ2 338 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 TESQ9UGI8 421 aaKnown RBP12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 POU2F3Q9UKI9 436 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 CORINQ9Y5Q5 1042 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 PMF1-BGLAPU3KQ54 211 aa12.68□□□□□ -0.38
SMARCE1-216ENST00000580419 C5orf58C9J3I9 102 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 INAFM1C9JVW0 142 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 AKAP8O43823 692 aaKnown RBP12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 FMO6PO60774 539 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 IGLV1-44P01699 117 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 TP53P04637 393 aaPredicted RBP12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 IDH3AP50213 366 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 EFNA4P52798 201 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 FOXG1P55316 489 aaPredicted RBP12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 RAB35Q15286 201 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 SWI5Q1ZZU3 235 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 GTDC1Q4AE62 458 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 ANKRD16Q6P6B7 361 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 ULK3Q6PHR2 472 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 CLEC2AQ6UVW9 174 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 BCL2L2Q92843 193 aaPredicted RBP12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 SLC38A4Q969I6 547 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 SLC41A3Q96GZ6 507 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 LRR1Q96L50 414 aa12.67□□□□□ -0.38
SMARCE1-216ENST00000580419 CACNG6Q9BXT2 260 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms