RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 RAD23AP54725 363 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 CDH12P55289 794 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 DLX5P56178 289 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 CTBP2P56545 445 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 TAS2R41P59536 307 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 PPP2R2BQ00005 443 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 TLE4Q04727 773 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 DAG1Q14118 895 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 TOMM34Q15785 309 aaPredicted RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 CTU2Q2VPK5 515 aaKnown RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 TMEM176BQ3YBM2 270 aaPredicted RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 SWT1Q5T5J6 900 aaKnown RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 ZNF613Q6PF04 617 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 PLXDC2Q6UX71 529 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 TSEN54Q7Z6J9 526 aaKnown RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 CLIP4Q8N3C7 705 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 SLC25A43Q8WUT9 341 aaPredicted RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 GMPPAQ96IJ6 420 aaPredicted RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 KLHDC3Q9BQ90 382 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 RBM24Q9BX46 236 aaKnown RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 TRIM2Q9C040 744 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 TMEM185BQ9H7F4 350 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 MCCC2Q9HCC0 563 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 KRCC1Q9NPI7 259 aaPredicted RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 SMPD3Q9NY59 655 aaPredicted RBP12.02□□□□□ -0.49
CLK3-218ENST00000566926 A4GNTQ9UNA3 340 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 EMC9Q9Y3B6 208 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 TESMINQ9Y4I5 508 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 U3KQV3 271 aa12.02□□□□□ -0.49
CLK3-218ENST00000566926 APCP25054 2843 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 A8MXE2 369 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 EI24O14681 340 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 TNFSF13O75888 250 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 SMNDC1O75940 238 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLK3-218ENST00000566926 DIRAS1O95057 198 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 OPN1LWP04000 364 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 ALPLP05186 524 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 RYKP34925 604 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 HTR3AP46098 478 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 LIMS1P48059 325 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 PCYT1AP49585 367 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 AQP4P55087 323 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 COPZ1P61923 177 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 MERTKQ12866 999 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 TRAM2Q15035 370 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 MICAQ29983 383 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 OTUD3Q5T2D3 398 aaPredicted RBP12.01□□□□□ -0.49
CLK3-218ENST00000566926 PLEKHM3Q6ZWE6 761 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 FAM214BQ7L5A3 538 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 GRINAQ7Z429 371 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 LUZP2Q86TE4 346 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 LSMEM1Q8N8F7 131 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 ATP6V1C2Q8NEY4 427 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 OR4C15Q8NGM1 316 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 GIPC3Q8TF64 312 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 FAM222BQ8WU58 562 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 SLC38A4Q969I6 547 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 ALPK1Q96QP1 1244 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 MCHR1Q99705 422 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 ZNF556Q9HAH1 456 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 TMEM27Q9HBJ8 222 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 FANCFQ9NPI8 374 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 RLIMQ9NVW2 624 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 DNAJB12Q9NXW2 375 aaKnown RBP12.01□□□□□ -0.49
CLK3-218ENST00000566926 SELENONQ9NZV5 590 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 PDP1Q9P0J1 537 aaPredicted RBP12.01□□□□□ -0.49
CLK3-218ENST00000566926 KIF17Q9P2E2 1029 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 FREM1Q5H8C1 2179 aa12.01□□□□□ -0.49
CLK3-218ENST00000566926 TRAPPC13A5PLN9 417 aa12□□□□□ -0.49
CLK3-218ENST00000566926 HTR3EA5X5Y0 456 aa12□□□□□ -0.49
CLK3-218ENST00000566926 TUBAL3A6NHL2 446 aa12□□□□□ -0.49
CLK3-218ENST00000566926 SOCS2O14508 198 aa12□□□□□ -0.49
CLK3-218ENST00000566926 FFAR1O14842 300 aa12□□□□□ -0.49
CLK3-218ENST00000566926 EFNA2O43921 213 aa12□□□□□ -0.49
CLK3-218ENST00000566926 AQP8O94778 261 aa12□□□□□ -0.49
CLK3-218ENST00000566926 CCNB2O95067 398 aa12□□□□□ -0.49
CLK3-218ENST00000566926 CD8BP10966 210 aa12□□□□□ -0.49
CLK3-218ENST00000566926 IL11P20809 199 aa12□□□□□ -0.49
CLK3-218ENST00000566926 KIR2DL2P43627 348 aaPredicted RBP12□□□□□ -0.49
CLK3-218ENST00000566926 CLK1P49759 484 aaKnown RBP12□□□□□ -0.49
CLK3-218ENST00000566926 MAP2K6P52564 334 aa12□□□□□ -0.49
CLK3-218ENST00000566926 RAC3P60763 192 aa12□□□□□ -0.49
CLK3-218ENST00000566926 SIRPAP78324 504 aa12□□□□□ -0.49
CLK3-218ENST00000566926 PIN1Q13526 163 aaPredicted RBP12□□□□□ -0.49
CLK3-218ENST00000566926 RNPS1Q15287 305 aaKnown RBP12□□□□□ -0.49
CLK3-218ENST00000566926 NPTX1Q15818 432 aa12□□□□□ -0.49
CLK3-218ENST00000566926 ENTPD8Q5MY95 495 aa12□□□□□ -0.49
CLK3-218ENST00000566926 FAHD1Q6P587 224 aa12□□□□□ -0.49
CLK3-218ENST00000566926 COMTD1Q86VU5 262 aa12□□□□□ -0.49
CLK3-218ENST00000566926 SLC43A2Q8N370 569 aa12□□□□□ -0.49
CLK3-218ENST00000566926 GALNT4Q8N4A0 578 aa12□□□□□ -0.49
CLK3-218ENST00000566926 ATG16L2Q8NAA4 619 aa12□□□□□ -0.49
CLK3-218ENST00000566926 OR10G2Q8NGC3 310 aa12□□□□□ -0.49
CLK3-218ENST00000566926 OR4D11Q8NGI4 311 aa12□□□□□ -0.49
CLK3-218ENST00000566926 OR6K3Q8NGY3 331 aa12□□□□□ -0.49
CLK3-218ENST00000566926 MAGEE2Q8TD90 523 aaPredicted RBP12□□□□□ -0.49
CLK3-218ENST00000566926 ADAMTS16Q8TE57 1224 aa12□□□□□ -0.49
CLK3-218ENST00000566926 DNAJA4Q8WW22 397 aaPredicted RBP12□□□□□ -0.49
CLK3-218ENST00000566926 CNOT9Q92600 299 aaKnown RBP12□□□□□ -0.49
CLK3-218ENST00000566926 STARD4Q96DR4 205 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms