RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 HSF2Q03933 536 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 CAMK2DQ13557 499 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 CRMP1Q14194 572 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 RTL4Q6ZR62 310 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 TAF8Q7Z7C8 310 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 WDR5BQ86VZ2 330 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 OR4N5Q8IXE1 308 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 OR5J2Q8NH18 312 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 OR56B4Q8NH76 319 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 THAP4Q8WY91 577 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 RADILQ96JH8 1075 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 SERINC2Q96SA4 455 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 BRD7Q9NPI1 651 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 FANCFQ9NPI8 374 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 PRDM9Q9NQV7 894 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 DUSP22Q9NRW4 184 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 ST6GALNAC2Q9UJ37 374 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 CLEC4AQ9UMR7 237 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 TRABD2BA6NFA1 517 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 BCAT2O15382 392 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SLC35G6P0C7Q6 338 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 CLUP10909 449 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 ICAM2P13598 275 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 CPMP14384 443 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SNRPBP14678 240 aaKnown RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 BLKP51451 505 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 CCR6P51684 374 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 NXPH1P58417 271 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 DBPQ10586 325 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 TRMT12Q53H54 448 aaKnown RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 TOR2AQ5JU69 321 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF613Q6PF04 617 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 C7orf57Q8NEG2 295 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 OR51A7Q8NH64 312 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 CMTM3Q96MX0 182 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 GAL3ST1Q99999 423 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 GSDMCQ9BYG8 508 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SDHAF3Q9NRP4 125 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 C14orf105Q9NVL8 296 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 MAT2BQ9NZL9 334 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 KCNE5Q9UJ90 142 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SCP2D1Q9UJQ7 156 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SPATA2Q9UM82 520 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SCN3AQ9NY46 2000 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 TRAV27A0A087WT01 109 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 A0A1W2PRG6 482 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 PEX12O00623 359 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 IFNA7P01567 189 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 IFNGP01579 166 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 PDGFAP04085 211 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 NME1P15531 152 aaKnown RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 NT5EP21589 574 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 DHPSP49366 369 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 ARHGDIBP52566 201 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SIM1P81133 766 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 ST3GAL2Q16842 350 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 EXOSC6Q5RKV6 272 aaKnown RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SLC43A2Q8N370 569 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 BMPERQ8N8U9 685 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 CDRT4Q8N9R6 151 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 CYB561A3Q8NBI2 242 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 OR4E2Q8NGC2 313 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 OR4D9Q8NGE8 314 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 OR13C5Q8NGS8 318 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SMAP2Q8WU79 429 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 LCN9Q8WX39 176 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SMIM19Q96E16 107 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 STACQ99469 402 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF559Q9BR84 538 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 CLEC4MQ9H2X3 399 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 TMEM27Q9HBJ8 222 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 ADAP2Q9NPF8 381 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 MEPEQ9NQ76 525 aaPredicted RBP12.15□□□□□ -0.46
VPS4A-204ENST00000566354 TMEM74BQ9NUR3 256 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 DAPP1Q9UN19 280 aa12.15□□□□□ -0.46
VPS4A-204ENST00000566354 SPEGQ15772 3267 aa12.15□□□□□ -0.47
VPS4A-204ENST00000566354 H3BUI4 141 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 MEN1O00255 615 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 B3GALT2O43825 422 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 GATBO75879 557 aaKnown RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SNAPINO95295 136 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 UCHL1P09936 223 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 DNASE1P24855 282 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 ACTA2P62736 377 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 ACTG2P63267 376 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SNTA1Q13424 505 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 KLF9Q13886 244 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 LGALSLQ3ZCW2 172 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-204ENST00000566354 FHL5Q5TD97 284 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 ZCCHC12Q6PEW1 402 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SSX6Q7RTT6 188 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 OVCH1Q7RTY7 1134 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SYS1Q8N2H4 156 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 COX18Q8N8Q8 333 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 DTWD2Q8NBA8 298 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 SMIM4Q8WVI0 70 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 DLL4Q9NR61 685 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 FBXL4Q9UKA2 621 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 A0A087WV62 115 aa12.14□□□□□ -0.47
VPS4A-204ENST00000566354 URADA6NGE7 173 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms