RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NCF2P19878 526 aaPredicted RBP13.03□□□□□ -0.32
CLN3-213ENST00000565047 SELENOPP49908 381 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 LTBQ06643 244 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 LGALS3BPQ08380 585 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 DMTNQ08495 405 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 SCARB2Q14108 478 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 C1QTNF12Q5T7M4 302 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 C9orf135Q5VTT2 229 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 C11orf71Q6IPW1 123 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 Q71RC1 249 aaPredicted RBP13.03□□□□□ -0.32
CLN3-213ENST00000565047 AAED1Q7RTV5 226 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 TSPEARQ8WU66 669 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 TAAR8Q969N4 342 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 RADILQ96JH8 1075 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 ANKRD27Q96NW4 1050 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 SLCO5A1Q9H2Y9 848 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 RABEP2Q9H5N1 569 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 ADPRHL2Q9NX46 363 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 LEF1Q9UJU2 399 aaPredicted RBP13.03□□□□□ -0.32
CLN3-213ENST00000565047 RASD1Q9Y272 281 aa13.03□□□□□ -0.32
CLN3-213ENST00000565047 FN1P02751 2386 aaKnown RBP13.03□□□□□ -0.32
CLN3-213ENST00000565047 NAV3Q8IVL0 2385 aa13.02□□□□□ -0.32
CLN3-213ENST00000565047 PTAFRP25105 342 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 RPS5P46782 204 aaKnown RBP13.02□□□□□ -0.33
CLN3-213ENST00000565047 GZMMP51124 257 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 ATP5J2P56134 94 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 KRTAP1-1Q07627 177 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 METTL21CQ5VZV1 264 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 TMEM225Q6GV28 225 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 TMEM108Q6UXF1 575 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 CLEC9AQ6UXN8 241 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 B3GLCTQ6Y288 498 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 NET1Q7Z628 596 aaPredicted RBP13.02□□□□□ -0.33
CLN3-213ENST00000565047 GPAT4Q86UL3 456 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 KDM8Q8N371 416 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 POMGNT2Q8NAT1 580 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 HIPK4Q8NE63 616 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 SLC38A4Q969I6 547 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 CGREF1Q99674 301 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 SIKE1Q9BRV8 207 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 TAPBPLQ9BX59 468 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 NELFAQ9H3P2 528 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 KAT8Q9H7Z6 458 aaKnown RBP13.02□□□□□ -0.33
CLN3-213ENST00000565047 NPHS2Q9NP85 383 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 UPB1Q9UBR1 384 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 CORO2BQ9UQ03 480 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 NDUFAF1Q9Y375 327 aa13.02□□□□□ -0.33
CLN3-213ENST00000565047 A0A087WUJ7 227 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 A0A0B4J2E0 115 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 LOC102725191A0A1B0GVB3 256 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 A0A1B0GX12 115 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 FBP2O00757 339 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 NDUFS7O75251 213 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 UPK3AO75631 287 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 IGHV4-39P01824 125 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 SLC6A2P23975 617 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 CDKN1AP38936 164 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 ZNF83P51522 516 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 CRYBA2P53672 197 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 TNK1Q13470 666 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 DUSP7Q16829 419 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 FAM91A1Q658Y4 838 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 ULK3Q6PHR2 472 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 LINC00114Q6XXX2 140 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 KRT73Q86Y46 540 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 GPR32P1Q8NGA4 272 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 OR6S1Q8NH40 331 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 SLC41A3Q96GZ6 507 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 SPATA5L1Q9BVQ7 753 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 C1QTNF6Q9BXI9 259 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 LINC00470Q9BZP3 86 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 KLHL14Q9P2G3 628 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.01□□□□□ -0.33
CLN3-213ENST00000565047 MGAT4BQ9UQ53 548 aa13.01□□□□□ -0.33
CLN3-213ENST00000565047 ELOA3DA6NLF2 546 aaPredicted RBP13□□□□□ -0.33
CLN3-213ENST00000565047 FAM171A2A8MVW0 826 aa13□□□□□ -0.33
CLN3-213ENST00000565047 EVPLLA8MZ36 301 aa13□□□□□ -0.33
CLN3-213ENST00000565047 MS4A18H0YCH9 400 aa13□□□□□ -0.33
CLN3-213ENST00000565047 RPL36A-HNRNPH2H7BZ11 118 aa13□□□□□ -0.33
CLN3-213ENST00000565047 LYPD3O95274 346 aa13□□□□□ -0.33
CLN3-213ENST00000565047 AHSA1O95433 338 aa13□□□□□ -0.33
CLN3-213ENST00000565047 LGI1O95970 557 aa13□□□□□ -0.33
CLN3-213ENST00000565047 THY1P04216 161 aa13□□□□□ -0.33
CLN3-213ENST00000565047 AQP1P29972 269 aa13□□□□□ -0.33
CLN3-213ENST00000565047 TTKP33981 857 aa13□□□□□ -0.33
CLN3-213ENST00000565047 CDH11P55287 796 aa13□□□□□ -0.33
CLN3-213ENST00000565047 MTPNP58546 118 aa13□□□□□ -0.33
CLN3-213ENST00000565047 TGFBR3Q03167 851 aa13□□□□□ -0.33
CLN3-213ENST00000565047 RBBP4Q09028 425 aa13□□□□□ -0.33
CLN3-213ENST00000565047 OR1Q1Q15612 314 aa13□□□□□ -0.33
CLN3-213ENST00000565047 NPTX1Q15818 432 aa13□□□□□ -0.33
CLN3-213ENST00000565047 MS4A18Q3C1V0 323 aa13□□□□□ -0.33
CLN3-213ENST00000565047 ELOA3BQ3SY89 546 aa13□□□□□ -0.33
CLN3-213ENST00000565047 ALG10BQ5I7T1 473 aa13□□□□□ -0.33
CLN3-213ENST00000565047 FAM69AQ5T7M9 428 aa13□□□□□ -0.33
CLN3-213ENST00000565047 CGB2Q6NT52 195 aa13□□□□□ -0.33
CLN3-213ENST00000565047 DHDDSQ86SQ9 333 aa13□□□□□ -0.33
CLN3-213ENST00000565047 TSPYL5Q86VY4 417 aaPredicted RBP13□□□□□ -0.33
CLN3-213ENST00000565047 ELOA3Q8NG57 546 aa13□□□□□ -0.33
CLN3-213ENST00000565047 OR4D11Q8NGI4 311 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms