RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SFXN5Q8TD22 340 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 MAGEE2Q8TD90 523 aaPredicted RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 YIPF5Q969M3 257 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 RAB39BQ96DA2 213 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 FCRL1Q96LA6 429 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 SYT3Q9BQG1 590 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF416Q9BWM5 594 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 FUT8Q9BYC5 575 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 C7orf69Q9H7B7 122 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF665Q9H7R5 613 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 NOX3Q9HBY0 568 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 TNFRSF12AQ9NP84 129 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 EXD2Q9NVH0 621 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ATAD3AQ9NVI7 634 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ADPRHL2Q9NX46 363 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ATP6V1HQ9UI12 483 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 OSGIN1Q9UJX0 560 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 TMED5Q9Y3A6 229 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 WDR45Q9Y484 360 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 EXOC1LA0A1B0GW35 172 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 ZC3H12DA2A288 527 aaKnown RBP6.28□□□□□ -1.4
VPS4A-203ENST00000564399 DNAJC9-AS1A6NH13 148 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 AQP7P3A6NL99 342 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM114B3SHH9 223 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 AZIN1O14977 448 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 CDC14BO60729 498 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 CHEK2O96017 543 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 MAPK1P28482 360 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 EVX1P49640 407 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 KCNJ10P78508 379 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 MAD2L1BPQ15013 274 aaPredicted RBP6.28□□□□□ -1.4
VPS4A-203ENST00000564399 ARHGAP11BQ3KRB8 267 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 GLIPR1L2Q4G1C9 344 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 ATAD3BQ5T9A4 648 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 GKAP1Q5VSY0 366 aaPredicted RBP6.28□□□□□ -1.4
VPS4A-203ENST00000564399 TIFABQ6ZNK6 161 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 LINGO2Q7L985 606 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 C6orf120Q7Z4R8 191 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 MDP1Q86V88 176 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 DDIASQ8IXT1 998 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 NATD1Q8N6N6 113 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 FAM71CQ8NEG0 241 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 PSMA8Q8TAA3 256 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 XAGE5Q8WWM1 108 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 RAB8BQ92930 207 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 SLC35G5Q96KT7 338 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 PRPF18Q99633 342 aaKnown RBP6.28□□□□□ -1.4
VPS4A-203ENST00000564399 PKP2Q99959 881 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 TAPBPLQ9BX59 468 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF350Q9GZX5 532 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 SLITRK2Q9H156 845 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 NELFAQ9H3P2 528 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 PIF1Q9H611 641 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.28□□□□□ -1.4
VPS4A-203ENST00000564399 ZDHHC18Q9NUE0 388 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 DUSP13Q9UII6 198 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 ZDHHC2Q9UIJ5 367 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 FZR1Q9UM11 496 aa6.28□□□□□ -1.4
VPS4A-203ENST00000564399 A0A087WUV0 522 aaPredicted RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 A0A1W2PPW3 197 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 LIPT2A6NK58 231 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 CLDN24A6NM45 220 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 TMEM229AB2RXF0 380 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 G3V2L1 256 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 AP3D1O14617 1153 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 LSM1O15116 133 aaKnown RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 NCR1O76036 304 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 ALX3O95076 343 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 VAMP5O95183 116 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 CHRM4P08173 479 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 NUDT7P0C024 238 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 OR12D1P0DN82 309 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 NAT2P11245 290 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 GATA3P23771 443 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 CXCR1P25024 350 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 RAD52P43351 418 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 MAP2K6P52564 334 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 RPS23P62266 143 aaKnown RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 HBA1P69905 142 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 MRPS11P82912 194 aaKnown RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 HPCAP84074 193 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 GALK2Q01415 458 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 BAMBIQ13145 260 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 PTGR1Q14914 329 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 MSMPQ1L6U9 139 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 TRMT5Q32P41 509 aaKnown RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 ALKBH6Q3KRA9 238 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 PRAMEF8Q5VWM4 474 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 PRAMEF7Q5VXH5 474 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 TYW3Q6IPR3 259 aaKnown RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 ZYG11AQ6WRX3 759 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 CREB3L2Q70SY1 520 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF771Q7L3S4 317 aaPredicted RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 LRP11Q86VZ4 500 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 RELL1Q8IUW5 271 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 CLEC4FQ8N1N0 589 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 GPR137CQ8N3F9 429 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 CCDC63Q8NA47 563 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 KIF18AQ8NI77 898 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 CNOT9Q92600 299 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms