RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 LSMEM1Q8N8F7 131 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 ZIC4Q8N9L1 334 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 RNF217Q8TC41 542 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 TSPEARQ8WU66 669 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 ZNF385AQ96PM9 386 aaKnown RBP14.81□□□□□ -0.04
CLK3-210ENST00000563112 SMR3AQ99954 134 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 IKZF5Q9H5V7 419 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 EVA1AQ9H8M9 152 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 TMEM27Q9HBJ8 222 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 POU2F3Q9UKI9 436 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 AMDHD2Q9Y303 409 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 MAGED1Q9Y5V3 778 aaPredicted RBP14.81□□□□□ -0.04
CLK3-210ENST00000563112 NSD1Q96L73 2696 aaPredicted RBP14.8□□□□□ -0.04
CLK3-210ENST00000563112 A0A1B0GWA3 101 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 A0A1W2PR80 420 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 SHISA9B4DS77 424 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 M0R1B8 84 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 WNT11O96014 354 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 SOD3P08294 240 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 RPS5P46782 204 aaKnown RBP14.8□□□□□ -0.04
CLK3-210ENST00000563112 FOXG1P55316 489 aaPredicted RBP14.8□□□□□ -0.04
CLK3-210ENST00000563112 RGS8P57771 180 aaPredicted RBP14.8□□□□□ -0.04
CLK3-210ENST00000563112 RBBP4Q09028 425 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 CYP51A1Q16850 503 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 METTL21CQ5VZV1 264 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 ULK3Q6PHR2 472 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 SLC22A25Q6T423 547 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 C6orf89Q6UWU4 347 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 CREB3L2Q70SY1 520 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 NET1Q7Z628 596 aaPredicted RBP14.8□□□□□ -0.04
CLK3-210ENST00000563112 LSRQ86X29 649 aaPredicted RBP14.8□□□□□ -0.04
CLK3-210ENST00000563112 C11orf65Q8NCR3 313 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 SLC38A4Q969I6 547 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 SLC47A1Q96FL8 570 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 COX4I2Q96KJ9 171 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 CPPED1Q9BRF8 314 aaPredicted RBP14.8□□□□□ -0.04
CLK3-210ENST00000563112 AMBRA1Q9C0C7 1298 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 SLC17A5Q9NRA2 495 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 TESQ9UGI8 421 aaKnown RBP14.8□□□□□ -0.04
CLK3-210ENST00000563112 PLCE1Q9P212 2302 aa14.8□□□□□ -0.04
CLK3-210ENST00000563112 TRIM64A6NGJ6 449 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 TRIM64BA6NI03 449 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 FTCDNL1E5RQL4 147 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 OVOL3O00110 214 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 SMAD7O15105 426 aaKnown RBP14.79□□□□□ -0.04
CLK3-210ENST00000563112 TPST1O60507 370 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 CD40P25942 277 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 AQP1P29972 269 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 P2RY4P51582 365 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 PRPS1P60891 318 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 EGR4Q05215 589 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 LTBQ06643 244 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 NFYCQ13952 458 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 ETFDHQ16134 617 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 ADRM1Q16186 407 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 ALG10BQ5I7T1 473 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 AGAP6Q5VW22 663 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 FAM91A1Q658Y4 838 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 RANBP3LQ86VV4 465 aaPredicted RBP14.79□□□□□ -0.04
CLK3-210ENST00000563112 KTI12Q96EK9 354 aaPredicted RBP14.79□□□□□ -0.04
CLK3-210ENST00000563112 ANKRD27Q96NW4 1050 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 CGREF1Q99674 301 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 C1QTNF6Q9BXI9 259 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 ZNF385DQ9H6B1 395 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 MRGBPQ9NV56 204 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 TLN2Q9Y4G6 2542 aa14.79□□□□□ -0.04
CLK3-210ENST00000563112 HEATR1Q9H583 2144 aaKnown RBP14.78□□□□□ -0.04
CLK3-210ENST00000563112 TRAV36DV7A0A075B6V5 113 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 ZNF587BE7ETH6 402 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 AIM2O14862 343 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 SASH3O75995 380 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 ZNF43P17038 809 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 CDH2P19022 906 aaPredicted RBP14.78□□□□□ -0.04
CLK3-210ENST00000563112 HTR2AP28223 471 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 CDKN1AP38936 164 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 C1DQ13901 141 aaKnown RBP14.78□□□□□ -0.04
CLK3-210ENST00000563112 MFSD13AQ14CX5 517 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 PGGHGQ32M88 737 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 GLIPR1L2Q4G1C9 344 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 FAM69AQ5T7M9 428 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 NIPAL3Q6P499 406 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 Q71RC1 249 aaPredicted RBP14.78□□□□□ -0.04
CLK3-210ENST00000563112 EPHX4Q8IUS5 362 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 SLC30A8Q8IWU4 369 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 WDR31Q8NA23 367 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 POM121Q96HA1 1249 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 OXGR1Q96P68 337 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 EPYCQ99645 322 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 TRAF4Q9BUZ4 470 aaPredicted RBP14.78□□□□□ -0.04
CLK3-210ENST00000563112 PTDSS2Q9BVG9 487 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 GRIP2Q9C0E4 1043 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 FKRPQ9H9S5 495 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 B3GALT5Q9Y2C3 310 aa14.78□□□□□ -0.04
CLK3-210ENST00000563112 AKAP8O43823 692 aaKnown RBP14.77□□□□□ -0.05
CLK3-210ENST00000563112 MFN2O95140 757 aa14.77□□□□□ -0.05
CLK3-210ENST00000563112 HEXAP06865 529 aa14.77□□□□□ -0.05
CLK3-210ENST00000563112 TROVE2P10155 538 aaKnown RBP eCLIP14.77□□□□□ -0.05
CLK3-210ENST00000563112 PAX7P23759 505 aa14.77□□□□□ -0.05
CLK3-210ENST00000563112 SELENOPP49908 381 aa14.77□□□□□ -0.05
CLK3-210ENST00000563112 CLDN17P56750 224 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms