RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TUBA4AP68366 448 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 LARS2Q15031 903 aaKnown RBP16.6■□□□□ 0.25
VPS35-202ENST00000561713 RAB35Q15286 201 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 C1orf140Q5VVS0 124 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 PRAMEF8Q5VWM4 474 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 PRAMEF7Q5VXH5 474 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 OR7E24Q6IFN5 339 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 MSANTD1Q6ZTZ1 278 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 TUBA1AQ71U36 451 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 COMTD1Q86VU5 262 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 C10orf111Q8N326 155 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 MUC15Q8N387 334 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 ARIH2OSQ8N7S6 290 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 GTF2H4Q92759 462 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 RADILQ96JH8 1075 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 TAPBPLQ9BX59 468 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 MGAT4BQ9UQ53 548 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 PCDHB14Q9Y5E9 798 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 NR5A2O00482 541 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 LY6HO94772 140 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 ZNF16P17020 682 aaPredicted RBP16.59■□□□□ 0.25
VPS35-202ENST00000561713 MPGP29372 298 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 CYB5R2Q6BCY4 276 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 LINGO2Q7L985 606 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 SSX8Q7RTT4 187 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 MSRB3Q8IXL7 192 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 FBXL14Q8N1E6 418 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 C1orf162Q8NEQ5 155 aaPredicted RBP16.59■□□□□ 0.25
VPS35-202ENST00000561713 EBF4Q9BQW3 602 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 C19orf24Q9BVV8 132 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 SPATA9Q9BWV2 254 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 RSPO3Q9BXY4 272 aaPredicted RBP16.59■□□□□ 0.25
VPS35-202ENST00000561713 SHARPINQ9H0F6 387 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 CACYBPQ9HB71 228 aaKnown RBP16.59■□□□□ 0.25
VPS35-202ENST00000561713 SLCO1B3Q9NPD5 702 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 PARPBPQ9NWS1 579 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 SLC25A37Q9NYZ2 338 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 AMDHD2Q9Y303 409 aa16.59■□□□□ 0.25
VPS35-202ENST00000561713 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.59■□□□□ 0.251e-8■■□□□ 13.8
VPS35-202ENST00000561713 A8MVM7 634 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 IGHV4-31P0DP07 118 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 SLC25A16P16260 332 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 SLC18A1P54219 525 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 RGNQ15493 299 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 ZNF311Q5JNZ3 666 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 BEND6Q5SZJ8 279 aaPredicted RBP16.58■□□□□ 0.24
VPS35-202ENST00000561713 NIPAL3Q6P499 406 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 KLHL24Q6TFL4 600 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 KDM8Q8N371 416 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 C17orf78Q8N4C9 275 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 NFKBIDQ8NI38 313 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 FAM168AQ92567 244 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 SLC25A36Q96CQ1 311 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 PTDSS2Q9BVG9 487 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 A4GALTQ9NPC4 353 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 SLAMF8Q9P0V8 285 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 LPAR3Q9UBY5 353 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 MOKQ9UQ07 419 aa16.58■□□□□ 0.24
VPS35-202ENST00000561713 A0A0G2JPF8 293 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 TMEM247A6NEH6 219 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 HNRNPCL2B2RXH8 293 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 HNRNPCL3B7ZW38 293 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 CLIC1O00299 241 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 POLR3GO15318 223 aaPredicted RBP16.57■□□□□ 0.24
VPS35-202ENST00000561713 HNRNPCL1O60812 293 aaKnown RBP16.57■□□□□ 0.24
VPS35-202ENST00000561713 NPIPB7O75200 414 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 KRT33AO76009 404 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 AHSA1O95433 338 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 HNRNPCL4P0DMR1 293 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 PNMTP11086 282 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 HTR2AP28223 471 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 RPS5P46782 204 aaKnown RBP16.57■□□□□ 0.24
VPS35-202ENST00000561713 MAP2K6P52564 334 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 STX1BP61266 288 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 TMEM225Q6GV28 225 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 EPGNQ6UW88 154 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 EPHX4Q8IUS5 362 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 C10orf105Q8TEF2 133 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 KTI12Q96EK9 354 aaPredicted RBP16.57■□□□□ 0.24
VPS35-202ENST00000561713 SF3B5Q9BWJ5 86 aaKnown RBP16.57■□□□□ 0.24
VPS35-202ENST00000561713 PRR14Q9BWN1 585 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 SEC61A2Q9H9S3 476 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 TCF7L2Q9NQB0 619 aa16.57■□□□□ 0.24
VPS35-202ENST00000561713 A0A096LPE4 126 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 A0A096LPI6 279 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 A0A1W2PPZ6 126 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 C5orf58C9J3I9 102 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 ZNF587BE7ETH6 402 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 HAX1O00165 279 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 ERLIN1O75477 346 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 UPK3AO75631 287 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 TGFBR3Q03167 851 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 EGR4Q05215 589 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 TBRG1Q3YBR2 411 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 IL17RELQ6ZVW7 336 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 CREB3L2Q70SY1 520 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 FUNDC1Q8IVP5 155 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 DEPDC4Q8N2C3 294 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 GOLGA6L1Q8N7Z2 621 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 POMGNT2Q8NAT1 580 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms