RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 IL7RP16871 459 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 LBPP18428 481 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 CXCR1P25024 350 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 CALCRP30988 508 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 CHI3L1P36222 383 aaPredicted RBP14.25□□□□□ -0.13
CLN3-208ENST00000561505 SELENOPP49908 381 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 RPL14P50914 215 aaKnown RBP14.25□□□□□ -0.13
CLN3-208ENST00000561505 ANXA11P50995 505 aaKnown RBP14.25□□□□□ -0.13
CLN3-208ENST00000561505 SH3BGRP55822 239 aaPredicted RBP14.25□□□□□ -0.13
CLN3-208ENST00000561505 ABCE1P61221 599 aaKnown RBP14.25□□□□□ -0.13
CLN3-208ENST00000561505 SRSF2Q01130 221 aaKnown RBP14.25□□□□□ -0.13
CLN3-208ENST00000561505 OR7A5Q15622 319 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 PDCD2Q16342 344 aaPredicted RBP14.25□□□□□ -0.13
CLN3-208ENST00000561505 CR1LQ2VPA4 569 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 LIPNQ5VXI9 398 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 WBP2NLQ6ICG8 309 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 KIRREL3Q8IZU9 778 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 NEU4Q8WWR8 484 aaPredicted RBP14.25□□□□□ -0.13
CLN3-208ENST00000561505 CHODLQ9H9P2 273 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 MEAF6Q9HAF1 191 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 RLIMQ9NVW2 624 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 RASD1Q9Y272 281 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 A0A096LPI6 279 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 ZNF587BE7ETH6 402 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 ALDOCP09972 364 aaKnown RBP14.24□□□□□ -0.13
CLN3-208ENST00000561505 CBR1P16152 277 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 IL12AP29459 219 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 S100A3P33764 101 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 CDKN2CP42773 168 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 LGALS3BPQ08380 585 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 RIN1Q13671 783 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 COX20Q5RI15 118 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 RNF220Q5VTB9 566 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 TMEM225Q6GV28 225 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 SLC46A3Q7Z3Q1 461 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 ZNF786Q8N393 782 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 TRIML2Q8N7C3 387 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 MFSD8Q8NHS3 518 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 STK35Q8TDR2 534 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 VRK1Q99986 396 aaPredicted RBP14.24□□□□□ -0.13
CLN3-208ENST00000561505 RAB1BQ9H0U4 201 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 SSU72Q9NP77 194 aaKnown RBP14.24□□□□□ -0.13
CLN3-208ENST00000561505 RCE1Q9Y256 329 aa14.24□□□□□ -0.13
CLN3-208ENST00000561505 TENM1Q9UKZ4 2725 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 LOC102725191A0A1B0GVB3 256 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 NR5A2O00482 541 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 UPK3AO75631 287 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 C1orf140Q5VVS0 124 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 DEF8Q6ZN54 512 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 ZNF836Q6ZNA1 936 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 MEX3DQ86XN8 651 aaKnown RBP14.23□□□□□ -0.13
CLN3-208ENST00000561505 SLC35B4Q969S0 331 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 PANX1Q96RD7 426 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 SEC61A2Q9H9S3 476 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 AIG1Q9NVV5 245 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 GPR45Q9Y5Y3 372 aa14.23□□□□□ -0.13
CLN3-208ENST00000561505 ZCCHC18P0CG32 403 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 NR2F1P10589 423 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 CDH2P19022 906 aaPredicted RBP14.22□□□□□ -0.13
CLN3-208ENST00000561505 THBS4P35443 961 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 CHN2P52757 468 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 CDH15P55291 814 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 UBE2NP61088 152 aaKnown RBP14.22□□□□□ -0.13
CLN3-208ENST00000561505 UFM1P61960 85 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 EGR4Q05215 589 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 BNIP2Q12982 314 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 CHI3L2Q15782 390 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 SPATA19Q7Z5L4 167 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 GPAT4Q86UL3 456 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 MYPOPQ86VE0 399 aaPredicted RBP14.22□□□□□ -0.13
CLN3-208ENST00000561505 VRK2Q86Y07 508 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 PEX5LQ8IYB4 626 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 OR52P1PQ8NH57 321 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 C3orf49Q96BT1 292 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 PKNOX2Q96KN3 472 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 PPP1R36Q96LQ0 422 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 ALKBH3Q96Q83 286 aaPredicted RBP14.22□□□□□ -0.13
CLN3-208ENST00000561505 KCNS3Q9BQ31 491 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 PTDSS2Q9BVG9 487 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 TAPBPLQ9BX59 468 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 B3GAT1Q9P2W7 334 aa14.22□□□□□ -0.13
CLN3-208ENST00000561505 IGHV2OR16-5A0A0B4J2B6 119 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 LRP5LA4QPB2 252 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 GKN3PP0CG01 181 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 PRG2P13727 222 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 DAOP14920 347 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 NPR2P20594 1047 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 IL2RGP31785 369 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 SLC1A6P48664 564 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 EVX1P49640 407 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 IQCCQ4KMZ1 466 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 LIN52Q52LA3 116 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 UGT2A3Q6UWM9 527 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 C6orf89Q6UWU4 347 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 ZNF621Q6ZSS3 439 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 ZNF627Q7L945 461 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 CCDC36Q8IYA8 594 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 CLIP4Q8N3C7 705 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 LINC01356Q8N9X3 169 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 IL17RDQ8NFM7 739 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms