RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MUC3AQ02505 3323 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ADAMTS9Q9P2N4 1935 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TRAV17A0A0B4J275 112 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 LY6G6EA0A0G2JKS1 128 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 H3BNX3 289 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ACOX3O15254 700 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 MT-ND2P03891 347 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 SDHBP21912 280 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 S100A5P33763 92 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 CASP3P42574 277 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 MAGEA2P43356 314 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 MAGEA8P43361 318 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PCYT1AP49585 367 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 CXCR4P61073 352 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TUBA1BP68363 451 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TUBA4AP68366 448 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ZFP36L1Q07352 338 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 DUSP8Q13202 625 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 RIN1Q13671 783 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TSTQ16762 297 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TBC1D25Q3MII6 688 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 C4orf46Q504U0 113 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TUBA1AQ71U36 451 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 COX15Q7KZN9 410 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 DPY19L4Q7Z388 723 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 GRINAQ7Z429 371 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 BHLHE23Q8NDY6 225 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 MPP4Q96JB8 637 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 FAM71F1Q96KD3 344 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 RPL36Q9Y3U8 105 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 CSAG2Q9Y5P2 127 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 U3KQA8 63 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TRGV5A0A0B4J1U4 118 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 OR2M5A3KFT3 312 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 OR5H15A6NDH6 313 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 FAM90A27PA6NNH2 459 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 A8MVM7 634 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 C21orf140B9A014 251 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 NTN3O00634 580 aaPredicted RBP4.94□□□□□ -1.62
VPS13C-209ENST00000560637 PRRG2O14669 202 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 H2BFMP0C1H6 154 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 PATE4P0C8F1 98 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ENDOUP21128 410 aaKnown RBP4.94□□□□□ -1.62
VPS13C-209ENST00000560637 DRD5P21918 477 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF84P51523 738 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 CSNK2A1P68400 391 aaPredicted RBP4.94□□□□□ -1.62
VPS13C-209ENST00000560637 PLP2Q04941 152 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 RASGEF1BQ0VAM2 473 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ITGADQ13349 1161 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 POU4F3Q15319 338 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 MEP1BQ16820 701 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 NHSL2Q5HYW2 709 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 FAM69AQ5T7M9 428 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 OR2G6Q5TZ20 316 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 TIGD3Q6B0B8 471 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 PLAG1Q6DJT9 500 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 C3orf33Q6P1S2 294 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 TMPPEQ6ZT21 453 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ATCAYQ86WG3 371 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 CARFQ8N187 725 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ANKK1Q8NFD2 765 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF675Q8TD23 568 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 FKBP10Q96AY3 582 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 LIN37Q96GY3 246 aaPredicted RBP4.94□□□□□ -1.62
VPS13C-209ENST00000560637 IP6K3Q96PC2 410 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 COQ7Q99807 217 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 RHNO1Q9BSD3 238 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 HDHD5Q9BXW7 423 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 RAB33BQ9H082 229 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 NUAK2Q9H093 628 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 MAGIXQ9H6Y5 334 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ZFP64Q9NPA5 681 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 SNTG1Q9NSN8 517 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 GALNT8Q9NY28 637 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 RAB26Q9ULW5 256 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 FLNBO75369 2602 aaKnown RBP4.94□□□□□ -1.62
VPS13C-209ENST00000560637 IGHV1-45A0A0A0MS14 117 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 A0A1W2PQ72 361 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 EFCAB10A6NFE3 127 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 SLC30A4O14863 429 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 CLPXO76031 633 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 SLITRK5O94991 958 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 LCATP04180 440 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 LCKP06239 509 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 UMODP07911 640 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 SMIM10L1P0DMW3 83 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 CDK4P11802 303 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 MTNR1AP48039 350 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 FUT7Q11130 342 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 CDC20Q12834 499 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 TIGD6Q17RP2 521 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 C6orf141Q5SZD1 244 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ACSM5Q6NUN0 579 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 PGBD2Q6P3X8 592 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 DNM1P34Q6PK57 102 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 LYPD4Q6UWN0 246 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 MAMSTRQ6ZN01 415 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 JAGN1Q8N5M9 183 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 OR8J1Q8NGP2 316 aa4.94□□□□□ -1.62
VPS13C-209ENST00000560637 ABHD17AQ96GS6 310 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms