RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 OR5J2Q8NH18 312 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 PRR7Q8TB68 274 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 LIPHQ8WWY8 451 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 DNAJC9Q8WXX5 260 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 RELTQ969Z4 430 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 SF3B5Q9BWJ5 86 aaKnown RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 RNF122Q9H9V4 155 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 CHST11Q9NPF2 352 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 MRPL39Q9NYK5 338 aaKnown RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 EMC3Q9P0I2 261 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 TNFRSF10DQ9UBN6 386 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 MGAT4BQ9UQ53 548 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 NCOA6Q14686 2063 aaPredicted RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 TRBV4-1A0A0J9YWV2 114 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 LOC102725191A0A1B0GVB3 256 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 MBD3L4A6NDZ8 208 aaPredicted RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 MBD3L3A6NE82 208 aaPredicted RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 MBD3L5A6NJ08 208 aaPredicted RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 AQP7P3A6NL99 342 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 HSPB2A8KAH6 182 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 FTCDNL1E5RQL4 147 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 G3V2T6 193 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 AKAP8O43823 692 aaKnown RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 CYTIPO60759 359 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 FZD7O75084 574 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 RCBTB2O95199 551 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 BAG2O95816 211 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 GNLYP22749 145 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 GRPRP30550 384 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 LIMS1P48059 325 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 SMSP52788 366 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 PRPS1P60891 318 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 IL1RL1Q01638 556 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 RASGEF1BQ0VAM2 473 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 ZP4Q12836 540 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 COX10Q12887 443 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 C1DQ13901 141 aaKnown RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 HSPB2Q16082 182 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 IGFBP7Q16270 282 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 ZNF239Q16600 458 aaKnown RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 C4orf17Q53FE4 359 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 TMEM201Q5SNT2 666 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 RIPPLY2Q5TAB7 128 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 C1QL3Q5VWW1 255 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 RPL13AP3Q6NVV1 102 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 C1orf94Q6P1W5 598 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 SHQ1Q6PI26 577 aaKnown RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 TBPL2Q6SJ96 375 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 RPTNQ6XPR3 784 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 HDDC2Q7Z4H3 204 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 NANOGNBQ7Z5D8 188 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 ADGRE4PQ86SQ3 457 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 ZDHHC13Q8IUH4 622 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 P3H2Q8IVL5 708 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 OR10G2Q8NGC3 310 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 OR4C15Q8NGM1 316 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 MBD3L2Q8NHZ7 208 aaPredicted RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 RND1Q92730 232 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 ZNF845Q96IR2 970 aaPredicted RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 OXGR1Q96P68 337 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 FUZQ9BT04 418 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 PTDSS2Q9BVG9 487 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 DCLRE1BQ9H816 532 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 FANCFQ9NPI8 374 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 MEPEQ9NQ76 525 aaPredicted RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 PARPBPQ9NWS1 579 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 COQ3Q9NZJ6 369 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 PDP1Q9P0J1 537 aaPredicted RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 STX18Q9P2W9 335 aaKnown RBP8.26□□□□□ -1.09
LDLR-210ENST00000559340 CLCF1Q9UBD9 225 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 ENOPH1Q9UHY7 261 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 TINAGQ9UJW2 476 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 MEMO1Q9Y316 297 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 EMC9Q9Y3B6 208 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 U3KQV3 271 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 TENM4Q6N022 2769 aa8.26□□□□□ -1.09
LDLR-210ENST00000559340 NAV2Q8IVL1 2488 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 CACNA1CQ13936 2221 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 UNC119BA6NIH7 251 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ZNF724A8MTY0 619 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 H0YC42 278 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 M0R082 166 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 AKR7A3O95154 331 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 IL18BPO95998 194 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ADAP00813 363 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 YES1P07947 543 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ASAH2BP0C7U1 165 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ADORA3P0DMS8 318 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 GLI4P10075 376 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ZNF23P17027 643 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 ZNF43P17038 809 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 AHCYP23526 432 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 CTSSP25774 331 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 CEACAM8P31997 349 aaPredicted RBP8.25□□□□□ -1.09
LDLR-210ENST00000559340 OPRM1P35372 400 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 OMPP47874 163 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 TPD52P55327 224 aaPredicted RBP8.25□□□□□ -1.09
LDLR-210ENST00000559340 ELF3P78545 371 aaPredicted RBP8.25□□□□□ -1.09
LDLR-210ENST00000559340 H3F3AP84243 136 aa8.25□□□□□ -1.09
LDLR-210ENST00000559340 LTBQ06643 244 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms