RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 NTN1O95631 604 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 APEHP13798 732 aaKnown RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 VASPP50552 380 aaPredicted RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 DLX5P56178 289 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 CTXN1P60606 82 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 LCN6P62502 163 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 IRF3Q14653 427 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 SLC22A25Q6T423 547 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 AVL9Q8NBF6 648 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 AKR7LQ8NHP1 331 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 BCL7CQ8WUZ0 217 aaPredicted RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 TRMT61AQ96FX7 289 aaKnown RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 SEC22AQ96IW7 307 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 PAPOLGQ9BWT3 736 aaKnown RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 GSX2Q9BZM3 304 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 NXF2Q9GZY0 626 aaKnown RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 HRH3Q9Y5N1 445 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 THSD7AQ9UPZ6 1657 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 DCDC2BA2VCK2 349 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 B4DGG1 531 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 ERVH48-1M5A8F1 160 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 GPR171O14626 319 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 KIAA0355O15063 1070 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 TGOLN2O43493 480 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 TMPRSS11DO60235 418 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 LILRB5O75023 590 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 HCKP08631 526 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 OR8G3PP0DMU2 310 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 TPT1P13693 172 aaKnown RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 HSD11B1P28845 292 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 GNRHRP30968 328 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 VIPR2P41587 438 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 RPS15AP62244 130 aaKnown RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 SIRPAP78324 504 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 HENMT1Q5T8I9 393 aaKnown RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 LRFN4Q6PJG9 635 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 CD300LGQ6UXG3 332 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 COX15Q7KZN9 410 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 OR52B4Q8NGK2 314 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 OR2AJ1Q8NGZ0 328 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 OR5K2Q8NHB8 316 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 HCAR2Q8TDS4 363 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 ZNF578Q96N58 590 aaPredicted RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 TMEM106CQ9BVX2 250 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 SEMA4CQ9C0C4 833 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 HRH4Q9H3N8 390 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 SIDT1Q9NXL6 827 aaKnown RBP6.6□□□□□ -1.35
USP3-210ENST00000559192 TAS2R8Q9NYW2 309 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 HS3ST2Q9Y278 367 aa6.6□□□□□ -1.35
USP3-210ENST00000559192 ZNF16P17020 682 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 OPRD1P41143 372 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 RPS27AP62979 156 aaKnown RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 UBA52P62987 128 aaKnown RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 ARHGAP40Q5TG30 622 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 OR6V1Q8N148 313 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 TSACCQ96A04 125 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 C10orf90Q96M02 699 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 SLC38A1Q9H2H9 487 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 A4GNTQ9UNA3 340 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 MIA3Q5JRA6 1907 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 RGPD3A6NKT7 1758 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 RGPD4Q7Z3J3 1758 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 SLC5A10A0PJK1 596 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 CARNS1A5YM72 827 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 H7C1Q1 480 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 GAPDHSO14556 408 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 PLA2G10O15496 165 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 FADS1O60427 444 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 IGFALSP35858 605 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 AKR1C2P52895 323 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 SLC26A5P58743 744 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 AKR1C1Q04828 323 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 CAMK2BQ13554 666 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 VAMP3Q15836 100 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 ARHGAP11BQ3KRB8 267 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 ZNF628Q5EBL2 1059 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 TIPARPQ7Z3E1 657 aaKnown RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 ZNF808Q8N4W9 903 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 RELL2Q8NC24 303 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 SCARB1Q8WTV0 552 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 FBLIM1Q8WUP2 373 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 NMNAT3Q96T66 252 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 TBL1XR1Q9BZK7 514 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 ULBP3Q9BZM4 244 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 MTIF3Q9H2K0 278 aaKnown RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 SEC61A2Q9H9S3 476 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 PATZ1Q9HBE1 687 aaKnown RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 ZNF281Q9Y2X9 895 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 ZNF831Q5JPB2 1677 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 ANKRD61A6NGH8 418 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 NPIPA5E9PKD4 350 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 HYAL3O43820 417 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 CLEC3AO75596 197 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 TEAD1P28347 426 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 CDK3Q00526 305 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 REEP5Q00765 189 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 RBMS2Q15434 407 aaKnown RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 DEFB110Q30KQ9 67 aa6.59□□□□□ -1.35
USP3-210ENST00000559192 YOD1Q5VVQ6 348 aaPredicted RBP6.59□□□□□ -1.35
USP3-210ENST00000559192 RPL22L1Q6P5R6 122 aaKnown RBP6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms