RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 C14orf105Q9NVL8 296 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 IGKV1D-42A0A075B6H8 117 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 TRAV1-2A0A0B4J238 106 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 TVP23AA6NH52 213 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 ZNF593O00488 134 aaPredicted RBP11.78□□□□□ -0.52
LDLR-207ENST00000558013 HOXC4P09017 264 aaPredicted RBP11.78□□□□□ -0.52
LDLR-207ENST00000558013 OR3A3P47888 321 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 DIO1P49895 249 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 FGFBP1Q14512 234 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 KCNAB1Q14722 419 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 ZNHIT3Q15649 155 aaPredicted RBP11.78□□□□□ -0.52
LDLR-207ENST00000558013 LEG1Q6P5S2 330 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 FAM199XQ6PEV8 388 aaPredicted RBP11.78□□□□□ -0.52
LDLR-207ENST00000558013 ARHGEF39Q8N4T4 335 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 BCORP1Q8N888 145 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 OR52I2Q8NH67 350 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 SLC25A38Q96DW6 304 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 WDR89Q96FK6 387 aaPredicted RBP11.78□□□□□ -0.52
LDLR-207ENST00000558013 DDOQ99489 341 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 SRA1Q9HD15 236 aaKnown RBP11.78□□□□□ -0.52
LDLR-207ENST00000558013 MKKSQ9NPJ1 570 aaPredicted RBP11.78□□□□□ -0.52
LDLR-207ENST00000558013 CLEC1BQ9P126 229 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 PCDHGA9Q9Y5G4 932 aaKnown RBP11.78□□□□□ -0.52
LDLR-207ENST00000558013 ASXL3Q9C0F0 2248 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 DMDP11532 3685 aa11.78□□□□□ -0.52
LDLR-207ENST00000558013 AK1P00568 194 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 TMIGD3P0DMS9 266 aaPredicted RBP11.77□□□□□ -0.52
LDLR-207ENST00000558013 CD53P19397 219 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 SELENOPP49908 381 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 MAZP56270 477 aaKnown RBP11.77□□□□□ -0.52
LDLR-207ENST00000558013 ZP1P60852 638 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 EIF2B5Q13144 721 aaKnown RBP11.77□□□□□ -0.52
LDLR-207ENST00000558013 KLF9Q13886 244 aaPredicted RBP11.77□□□□□ -0.52
LDLR-207ENST00000558013 TRAM1Q15629 374 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 POMZP3Q6PJE2 187 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 APOOLQ6UXV4 268 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 CREB3L2Q70SY1 520 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 GRAMD2AQ8IUY3 354 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 MCATQ8IVS2 390 aaKnown RBP11.77□□□□□ -0.52
LDLR-207ENST00000558013 ZNF527Q8NB42 609 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 OR8K3Q8NH51 312 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 OR14A16Q8NHC5 309 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 CEP76Q8TAP6 659 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 C3orf49Q96BT1 292 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 ELF4Q99607 663 aaPredicted RBP11.77□□□□□ -0.52
LDLR-207ENST00000558013 NRIP3Q9NQ35 241 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 PIAS3Q9Y6X2 628 aa11.77□□□□□ -0.52
LDLR-207ENST00000558013 A0A087WUJ7 227 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 TMEM72A0PK05 275 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 NPIPB9F8W1W9 429 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 TNFRSF10AO00220 468 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 GPR171O14626 319 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 IFNA16P05015 189 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 GABRG2P18507 467 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 PPM1FP49593 454 aaPredicted RBP11.77□□□□□ -0.53
LDLR-207ENST00000558013 P2RX3P56373 397 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 Q6ZTK2 550 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 FAM160A2Q8N612 972 aaPredicted RBP11.77□□□□□ -0.53
LDLR-207ENST00000558013 OR10AC1Q8NH08 325 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 SLC2A12Q8TD20 617 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 GPBAR1Q8TDU6 330 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 MAP3K3Q99759 626 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 LMF2Q9BU23 707 aaKnown RBP11.77□□□□□ -0.53
LDLR-207ENST00000558013 OR10A4Q9H209 315 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 MTIF3Q9H2K0 278 aaKnown RBP11.77□□□□□ -0.53
LDLR-207ENST00000558013 LIN7BQ9HAP6 207 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 SPATA2Q9UM82 520 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 OR5K3A6NET4 321 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 A8MUA0 341 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 TNFRSF10CO14798 259 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 IGHV4-34P06331 123 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 H2AFB2P0C5Z0 115 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 HYAL4Q2M3T9 481 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 LINC01590Q5TEZ4 76 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 RPL22L1Q6P5R6 122 aaKnown RBP11.77□□□□□ -0.53
LDLR-207ENST00000558013 DEFB119Q8N690 84 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 TEX19Q8NA77 164 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 OR2T4Q8NH00 348 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 HOXB13Q92826 284 aaPredicted RBP11.77□□□□□ -0.53
LDLR-207ENST00000558013 RTN4RQ9BZR6 473 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 SEMA4CQ9C0C4 833 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.77□□□□□ -0.53
LDLR-207ENST00000558013 DZANK1Q9NVP4 752 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 NUBP2Q9Y5Y2 271 aa11.77□□□□□ -0.53
LDLR-207ENST00000558013 RP1P56715 2156 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 SERINC4A6NH21 518 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 SSNA1O43805 119 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 ARL6IP5O75915 188 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 MST1P26927 711 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 RBM34P42696 430 aaKnown RBP11.76□□□□□ -0.53
LDLR-207ENST00000558013 GPR3P46089 330 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 VEGFCP49767 419 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 POU4F2Q12837 409 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 FAM209AQ5JX71 171 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 PRR22Q8IZ63 422 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 OR11G2Q8NGC1 345 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 OR51A4Q8NGJ6 313 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 ALG12Q9BV10 488 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 ULBP3Q9BZM4 244 aa11.76□□□□□ -0.53
LDLR-207ENST00000558013 CHIAQ9BZP6 476 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms