RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 GLB1L2Q8IW92 636 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 HDDC3Q8N4P3 179 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 MRPL43Q8N983 215 aaKnown RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 PPP1R14AQ96A00 147 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 SLC25A28Q96A46 364 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 CD93Q9NPY3 652 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 DIABLOQ9NR28 239 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 SPAG17Q6Q759 2223 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 PRICKLE3O43900 615 aaPredicted RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 TBX19O60806 448 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 VSIG10L2P0DP72 767 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 AMZ1Q400G9 498 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 TMEM64Q6YI46 380 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 RGP1Q92546 391 aaPredicted RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 TOE1Q96GM8 510 aaKnown RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 MS4A4EQ96PG1 132 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 ADAT1Q9BUB4 502 aaKnown RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 FRYQ5TBA9 3013 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 TMEM72A0PK05 275 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 OR6C68A6NDL8 312 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 HCRTR1O43613 425 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 SUSD5O60279 629 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 SC5DO75845 299 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 F13BP05160 661 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 ERGP11308 486 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 NFYAP23511 347 aaPredicted RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 ITPKBP27987 946 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 SORDQ00796 357 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 MLC1Q15049 377 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 LIN54Q6MZP7 749 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 ASPGQ86U10 573 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 GPAT4Q86UL3 456 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 GPALPP1Q8IXQ4 340 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 SLC35F2Q8IXU6 374 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 METTL27Q8N6F8 245 aaPredicted RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 OR14C36Q8NHC7 312 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 BRIX1Q8TDN6 353 aaKnown RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 HGDQ93099 445 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 MARC2Q969Z3 335 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 SMIM19Q96E16 107 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 COX14Q96I36 57 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 C10orf90Q96M02 699 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 ELF4Q99607 663 aaPredicted RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 PRSS16Q9NQE7 514 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 TBC1D29Q9UFV1 150 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 KLHDC2Q9Y2U9 406 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 PCDHGA9Q9Y5G4 932 aaKnown RBP11.32□□□□□ -0.6
LDLR-205ENST00000557933 TEX51A0A1B0GUA7 166 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 CCSO14618 274 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 PDCD5O14737 125 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 KHNYNO15037 678 aaKnown RBP11.31□□□□□ -0.6
LDLR-205ENST00000557933 RCBTB2O95199 551 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 RLN2P04090 185 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 HNRNPA1P09651 372 aaKnown RBP eCLIP11.31□□□□□ -0.6
LDLR-205ENST00000557933 DDX6P26196 483 aaKnown RBP eCLIP11.31□□□□□ -0.62e-8■■□□□ 14
LDLR-205ENST00000557933 PTBP1P26599 531 aaKnown RBP eCLIP11.31□□□□□ -0.62e-11■□□□□ 9.4
LDLR-205ENST00000557933 PTH2RP49190 550 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 P2RX1P51575 399 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 PPP1CAP62136 330 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 PCGF3Q3KNV8 242 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 LRRC69Q6ZNQ3 347 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 OR4K14Q8NGD5 310 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 HAVCR2Q8TDQ0 301 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 TSACCQ96A04 125 aaPredicted RBP11.31□□□□□ -0.6
LDLR-205ENST00000557933 WBP1Q96G27 269 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 LMF1Q96S06 567 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 FGF22Q9HCT0 170 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 MED17Q9NVC6 651 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 OR5V1Q9UGF6 321 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 PHF11Q9UIL8 331 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 IKZF2Q9UKS7 526 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 DTX4Q9Y2E6 619 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 IFITM5A6NNB3 132 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 KRT33AO76009 404 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 CTNNB1P35222 781 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 GBX2P52951 348 aaPredicted RBP11.31□□□□□ -0.6
LDLR-205ENST00000557933 DPTQ07507 201 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 CBFBQ13951 182 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 ZIC1Q15915 447 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 ZNF542PQ5EBM4 170 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 VITQ6UXI7 678 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 FGD2Q7Z6J4 655 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 DUSP19Q8WTR2 217 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 TNFAIP8L1Q8WVP5 186 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 PTDSS2Q9BVG9 487 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 REG4Q9BYZ8 158 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 FBXO4Q9UKT5 387 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 CAMK2AQ9UQM7 478 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 BRWD1Q9NSI6 2320 aa11.31□□□□□ -0.6
LDLR-205ENST00000557933 TRAV8-7A0A075B6U6 113 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 CXorf51AA0A1B0GTR3 108 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 DCTN6O00399 190 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 STX11O75558 287 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 ADRA2CP18825 462 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 HLXQ14774 488 aaPredicted RBP11.3□□□□□ -0.6
LDLR-205ENST00000557933 ARHGAP19Q14CB8 494 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 C2orf27AQ580R0 203 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 NHLRC3Q5JS37 347 aa11.3□□□□□ -0.6
LDLR-205ENST00000557933 TMEM88Q6PEY1 159 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 298.9 ms