RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ANKRD10Q9NXR5 420 aa14.93□□□□□ -0.02
SHMT2-231ENST00000557433 MED11Q9P086 117 aa14.93□□□□□ -0.02
SHMT2-231ENST00000557433 PCDH10Q9P2E7 1040 aa14.93□□□□□ -0.02
SHMT2-231ENST00000557433 IER3IP1Q9Y5U9 82 aa14.93□□□□□ -0.02
SHMT2-231ENST00000557433 NPIPA5A0A0B4J1W7 369 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 A0A1B0GW55 424 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 OTOL1A6NHN0 477 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 NPIPA7E9PJI5 369 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 CTNSO60931 367 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 GLCEO94923 617 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 DUX4L2P0CJ85 424 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 DUX4L3P0CJ86 424 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 DUX4L4P0CJ87 422 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 DUX4L5P0CJ88 424 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 DUX4L6P0CJ89 424 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 DUX4L7P0CJ90 424 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 NPIPA8P0DM63 369 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 NAA10P41227 235 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 PSMD4P55036 377 aaKnown RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 RBMS2Q15434 407 aaKnown RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 NDUFAF6Q330K2 333 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 LINC00303Q3SY05 128 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 TMEM255AQ5JRV8 349 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 MTFR2Q6P444 385 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 ARL14Q8N4G2 192 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 EIF4E3Q8N5X7 224 aaKnown RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 NPEPL1Q8NDH3 523 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 ZCCHC10Q8TBK6 192 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 THRSPQ92748 146 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 HSPA12BQ96MM6 686 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 OR2M4Q96R27 311 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 GPX7Q96SL4 187 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 APOOQ9BUR5 198 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 SHARPINQ9H0F6 387 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 SRMSQ9H3Y6 488 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 TCF7L1Q9HCS4 588 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 POT1Q9NUX5 634 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 DNAJB12Q9NXW2 375 aaKnown RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 MRPL15Q9P015 296 aaKnown RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 DUX4Q9UBX2 424 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 OR5V1Q9UGF6 321 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 A8MXK9 166 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 TRIM77I1YAP6 450 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 EGFP01133 1207 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 IGF2P01344 180 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 HOXC4P09017 264 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 SPI1P17947 270 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 HCCSP53701 268 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 PRPS1P60891 318 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 GMFBP60983 142 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 MGAT2Q10469 447 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 Q499Y3 187 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 ZNF684Q5T5D7 378 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 FAM220AQ7Z4H9 259 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 HSD17B13Q7Z5P4 300 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 SFTPA1Q8IWL2 248 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 SPPL3Q8TCT6 385 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 LMF2Q9BU23 707 aaKnown RBP14.92□□□□□ -0.02
SHMT2-231ENST00000557433 SLC19A3Q9BZV2 496 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 C12orf4Q9NQ89 552 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 KLK11Q9UBX7 282 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 MOKQ9UQ07 419 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 ZNF337Q9Y3M9 751 aa14.92□□□□□ -0.02
SHMT2-231ENST00000557433 EFCAB7A8K855 629 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 SUSD5O60279 629 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 AQP8O94778 261 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 WDPCPO95876 746 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 NGFRP08138 427 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 NMBP08949 121 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 CSF1P09603 554 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 CTNNB1P35222 781 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 SLC25A1P53007 311 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 TAS2R20P59543 309 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 ENPP2Q13822 863 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 HLXQ14774 488 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-231ENST00000557433 ZNHIT3Q15649 155 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-231ENST00000557433 FAM78AQ5JUQ0 283 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 VITQ6UXI7 678 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 ZNF433Q8N7K0 673 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-231ENST00000557433 SMARCD2Q92925 531 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 KLHL15Q96M94 604 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 ASB16Q96NS5 453 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 MNTQ99583 582 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 LMAN2LQ9H0V9 348 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 RNF208Q9H0X6 261 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 CA10Q9NS85 328 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 PCOLCE2Q9UKZ9 415 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 COPS3Q9UNS2 423 aa14.91□□□□□ -0.02
SHMT2-231ENST00000557433 TBC1D3IA0A087WXS9 549 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 HSPB2A8KAH6 182 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 MCIDASD6RGH6 385 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 P2RX6O15547 441 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 FGF17O60258 216 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 TSPAN9O75954 239 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 GLSO94925 669 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 HRGP04196 525 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 ATF4P18848 351 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 CDK2P24941 298 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 AK4P27144 223 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms