RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SEMG1	P04279	462 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PTHLH	P12272	177 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB3A	P20336	220 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RORA	P35398	523 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	VIPR2	P41587	438 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	P2RX1	P51575	399 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF41	P51814	821 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	NKX6-1	P78426	367 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	NTHL1	P78549	312 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TNFRSF17	Q02223	184 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GSG1	Q2KHT4	349 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR5M10	Q6IEU7	315 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	DNM1P34	Q6PK57	102 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR4D6	Q8NGJ1	314 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF417	Q8TAU3	575 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ARRDC3	Q96B67	414 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR2M4	Q96R27	311 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ELOVL3	Q9HB03	270 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC52A3	Q9NQ40	469 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRMT8	Q9NR22	394 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC22A11	Q9NSA0	550 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ASB6	Q9NWX5	421 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	MSRA	Q9UJ68	235 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CCDC163	A0A0D9SF12	145 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005		H3BNC9	293 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SIGLEC5	O15389	551 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CTNS	O60931	367 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	MAK	P20794	623 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GZMK	P49863	264 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RPS21	P63220	83 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	UBE2I	P63279	158 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	FLI1	Q01543	452 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACY1	Q03154	408 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SIGLEC14	Q08ET2	396 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CCIN	Q13939	588 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	KCNAB1	Q14722	419 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	KIAA0040	Q15053	153 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RNASE10	Q5GAN6	216 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	EXOSC6	Q5RKV6	272 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF776	Q68DI1	518 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF585A	Q6P3V2	769 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	LIMS2	Q7Z4I7	341 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RTN4RL1	Q86UN2	441 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	FAM26E	Q8N5C1	309 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SUMF2	Q8NBJ7	301 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	LMX1A	Q8TE12	382 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	HAS2	Q92819	552 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	MARC2	Q969Z3	335 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	KCTD12	Q96CX2	325 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	KLHL15	Q96M94	604 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	INTS14	Q96SY0	518 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	DNTTIP1	Q9H147	329 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CCDC86	Q9H6F5	360 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZMAT3	Q9HA38	289 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	HRASLS2	Q9NWW9	162 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PTTG3P	Q9NZH4	202 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	NCDN	Q9UBB6	729 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRSS44	E7EML9	344 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM189-UBE2V1	I3L0A0	370 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	LANCL1	O43813	399 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	FBXO24	O75426	580 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	HTR3B	O95264	441 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	WISP3	O95389	354 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	KLF8	O95600	359 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ATP1B1	P05026	303 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	NDUFS1	P28331	727 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ARRB1	P49407	418 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CCR9	P51686	369 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	NDUFA6	P56556	154 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ALKBH1	Q13686	389 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CRMP1	Q14194	572 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PPA1	Q15181	289 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLEKHN1	Q494U1	663 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	HENMT1	Q5T8I9	393 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	FIGLA	Q6QHK4	219 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC35D2	Q76EJ3	337 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	WDSUB1	Q8N9V3	476 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR5T3	Q8NGG3	340 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPR148	Q8TDV2	347 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	C14orf79	Q96F83	325 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC25A32	Q9H2D1	315 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	APMAP	Q9HDC9	416 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	FGF20	Q9NP95	211 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TAS2R4	Q9NYW5	299 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	EXO1	Q9UQ84	846 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CSAG2	Q9Y5P2	127 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TCRBV16S1A1N1	A0A5B0	115 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM72	A0PK05	275 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM150C	B9EJG8	249 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	KIAA0355	O15063	1070 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CA12	O43570	354 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ONECUT3	O60422	494 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	B3GALNT1	O75752	331 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CTSL	P07711	333 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	HIST1H1T	P22492	207 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	DCTD	P32321	178 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	DLX5	P56178	289 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TAS2R31	P59538	309 aa		4.61	□□□□□ -1.67

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